KEGG   Puntigrus tetrazona (Sumatra barb): 122347425
Entry
122347425         CDS       T08985                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
ptet  Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ptet00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122347425 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptet03019]
    122347425 (rae1)
   03036 Chromosome and associated proteins [BR:ptet03036]
    122347425 (rae1)
Messenger RNA biogenesis [BR:ptet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     122347425 (rae1)
Chromosome and associated proteins [BR:ptet03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    122347425 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_SPT8 WDR90_beta-prop_4th ExoI_SH3 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 122347425
NCBI-ProteinID: XP_043098612
LinkDB
Position
6:8482920..8489469
AA seq 369 aa
MSLFGANTGFGSGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQT
IQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttattcggggcgaacacgggctttggctccgggggaacgggtgtatttggtagc
accaccacagacagtcataatcccatgaaggatgttgaagtaacatcgccccccgatgac
agcataagctgcttggccttcagtccccccacgatgccggggaactttctgatcggaggc
tcgtgggccaatgacgtgcggtgctgggaggttcaggataatggtcagactgtccctaaa
gcccagcagatgcacacaggcccagtgcttgatgtgtgctggagtgatgatggcagtaaa
gtctttacagcctcctgtgacaaaaccgctaagatgtgggatctgaacagcaatcagacg
attcagatagcacaacacgaaggtccaatcaggacaattcattggattaaagcaccaaac
tacagctgtgttatgactggcagctgggacaaaacgctgaagttttgggatacacgatcc
ccaaaccctatgatgtccctgcagatgccagagaggtgttactgtgcagatgtggtctat
cctatggctgttgtggccactgcagaacgtggtcttattgtttaccagttggaaaatcaa
ccttcagagtttcgacgtatagagtcacctctgaagcatcagcaccgctgtgtggccatc
tttaaggacaagcagagtaaacccactggttttgcactgggcagcatcgagggacgagtt
gccattcattacataaacccccctaatccagccaaggacaatttcacctttaagtgccac
aggtctaatggaaccaatactgccacaccccaagatatttatgctgtgaatgctatttcc
tttcacccggtccacggcactctggcgacagtagggtctgatgggcgcttcagtttctgg
gataaagatgcccgcaccaagctgaagacctctgaacagttagatcaaccaataactgct
tgttgcttcaataacaatgggaacatatttgcctatgcttccagctatgactggtctaag
ggacatgaatattacaatccccagaaaaagaattacatcttcttgaggaatgcagctgag
gaactgaagcctcggaacaagaaatggtga

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