Puntigrus tetrazona (Sumatra barb): 122347991
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Entry
122347991 CDS
T08985
Name
(RefSeq) collagen alpha-1(XXV) chain-like
KO
K24356
collagen type XXV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122347991
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122347991
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122347991
NCBI-ProteinID:
XP_043099159
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Position
7:complement(34073206..34151251)
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AA seq
473 aa
AA seq
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MYNDEIEKSDCDDLALTAEACFSASSERAKDVGLSCFQLPGSGCNGPYVGQVTSLCISTE
HCAPRSPGQDVEYYIYHISHRETPGMPGEIGQMGPEGPPGQKGSVGPPGISGIDGMKGDR
GERGEKGDMGEEGPKGDPGEKGDAGSSAAGIKGEPGEPGRGGQKGEPGLPGLPGLPGIKG
EPGFYGPQGEPGLPGLPGTKEREENKDRLARVNVVRRVQQGTRVARVFLDFLAWMVKGVT
KVQKGHGNPGISGEKGSMGLPGLQGVNGLKGDKGDTGLPGPQGPSIIGAPGAPGPHGPPG
PMGPHGFPGPKGEPGLHGLKGLRGEPGHKGDRGPLGLPGASGLDGKPGPRGMDGPIGTPG
PAGPKGDRGEKGDVGDPGPRGPYGLPGAAGTPGMDGLPGLKGDKGNMGKERKGDCDIDVV
KQGMKLSPSLLIRSDVNGHLQSSLGTKPLYRPNAGHGVEDQCEDLTFKDSLLQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtataatgacgagattgaaaaatcagattgtgatgaccttgcactcactgctgaagct
tgctttagtgcttcttcagaaagagccaaggatgtgggtttatcttgcttccagcttcct
ggatctggatgcaatggcccatatgtgggccaggttacatctttatgcatttccactgaa
cactgtgctcccaggagtcctggccaagatgttgagtactatatttatcatatctctcac
agggagactcctggaatgccaggagagattggtcaaatgggacctgagggccctccagga
cagaagggttctgttgggccacctggtatttcaggtatcgatggaatgaagggtgacaga
ggtgaacggggtgaaaagggagacatgggagaggaggggccaaaaggtgaccctggagag
aagggtgatgccggatcctctgctgctggaatcaagggtgagcctggtgagccagggcgc
ggaggacaaaagggtgagccaggacttccagggctgcctggactccccgggattaagggt
gaacctggattctatggtcctcaaggtgagcctggacttccaggcctgccaggaactaag
gagagagaggagaacaaggaccgcctggcaagggtgaacgtggtgagacgggtccagcag
ggcacaagggtggccagggtgttcctggacttcctggcctggatggtgaaaggggtcaca
aaggttcaaaagggacatgggaatcccggaatatccggagaaaaaggatcaatgggtctt
cctgggttacagggtgtgaatggtctgaaaggagacaaaggagatactggtttgcctggc
cctcagggaccctcgattattggggcccctggagcacctggtccacatggaccacctggc
cctatgggtcctcatggattccctgggccaaagggggaacctgggttgcatggtctcaag
ggactgcgaggggaacctgggcataagggggacagaggacccctgggtctccccggagca
tctggcttggacggcaagccaggacccaggggtatggacggaccaattgggacacctggt
ccagcaggtccaaagggagatagaggtgagaagggtgatgtgggtgatcctggacctaga
gggccatatgggttacctggagctgctggaacacctggaatggatgggttaccaggctta
aagggagacaagggcaacatggggaaagagagaaaaggtgattgtgacatagatgttgtg
aaacagggaatgaaactttcaccctctctactgattagatctgatgtcaatggacattta
caaagcagtttaggcacaaagcctttatatagaccgaatgcgggccatggagttgaagat
cagtgtgaagaccttacatttaaggattctcttctacaatag
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