Puntigrus tetrazona (Sumatra barb): 122348514
Help
Entry
122348514 CDS
T08985
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122348514 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122348514 (smarca2)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122348514 (smarca2)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122348514 (smarca2)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122348514 (smarca2)
Chromatin remodeling factors
BAF complex
122348514 (smarca2)
PBAF complex
122348514 (smarca2)
GBAF(ncBAF) complex
122348514 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122348514
NCBI-ProteinID:
XP_043099979
LinkDB
All DBs
Position
7:2633622..2671176
Genome browser
AA seq
1579 aa
AA seq
DB search
MSTPNEPPVGMTHAGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHAMQG
QGAGEYSQDLHPMHKPMEGMHEKGMGDDMHFGQMKGVGMRSLHSGMGPPQSPMDQHSQGY
MSPHPSPMSQVPEHVPSPMSGGGPTPPQISQGQSPMMPMDPQGMGQQARGQSAFSPVQLQ
QLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPINTGPYNRPPGMPMPHGVPAT
GPCPSPAMQTHTQSSGPKPWPEGQGSETPNAPQKLSVPPPSGRPSPAPPLAPAGTQPVPS
TSLTPQPQPQPPAGPGQPSLIIQLQQKQNRITPIQKPQGLDPVELLQEREYRLQARIAHR
IQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRLDVVACMRRDTTLETALNSKAYKR
SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLS
KAIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV
ANLTELVYEHKAAQAAKEKKKKRKKKKKEAGDSEGMGAIGPDGELIDENSQMSELPVKVI
QTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDDEEVISRAESEE
KKVIDPNSDEVSETAAKHIIESAKQDVDDEYSVQAGQTSSQSYYGVAHAVIERVEKQSTL
LINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI
IVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQLRSGKFNVLITTYEYIIKDKH
ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL
LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQL
PEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGHKTLMNTIMQLKKICNH
PYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSL
MTIMEDYFAYRNFLYLRLDGTTKSEDRASLLKKFNDEGSQYFIFLLSTRAGGLGLNLQAA
DTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKV
IQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARNEDEFELFMRMDL
DRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEEKIFGRGSRHRRDVDYSD
TLTEKQWLRAIEDGNLEEIEEEIRLKRRKRRRHVDKDMRREDAEKAKKRRGRPPAEKLSP
NPPKLTKQMNAIVDTVINYRDASGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERV
RNHKYRSVSDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQSVFKSARQKIAREESEDDSN
DDDDDEEESEEESKSVKVKIKLSKRDERCQDKGKKRPSRGKAKPVVSDDDSEDDQEENFK
RKTSSRRGATVTTTEEEMS
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccccaatgagccaccagttgggatgacccatgctggtccctcaccaggtgct
ggcctgtctcctggacccatcctagggcccagccctggacccggcccctctcctggatct
gtacacagcatgatgggccccagcccagggcccccaagtgtcccgcatgctatgcagggc
cagggagctggagaatattcacaggacctgcacccaatgcataagcctatggagggaatg
catgagaaggggatgggagacgatatgcactttggccagatgaaaggggtaggaatgaga
tccctgcacagtggcatgggtcctccacagagccctatggatcaacacagtcaaggctac
atgtcccctcatccctcaccaatgagccaggtgccggagcatgtgcccagtcctatgtca
ggaggaggtccaactccaccacaaatttcccagggtcagtcacccatgatgcccatggat
ccacaggggatgggacaacaggccaggggtcagtctgccttcagcccagtccagctgcag
caactgagggctcagattctggcatacaagatcctgggtcgtggtcagcctctgcctgag
aatctgcaattagctgtgcagggcaagaggagcctccccaccatgcagcagcagcccatc
aacaccggcccttacaacagacctccaggtatgcctatgcctcatggagtgcctgcaaca
ggcccctgtccctctccagccatgcagactcatacccagagttctggcccaaaaccgtgg
cctgaaggtcaaggctcagagaccccaaacgctccacagaagctgtcggtcccacctccc
agcggtagaccctctccagctcccccgctggctcccgctggcacgcaacctgttcccagc
acatccctcacaccccaaccccaacctcagccaccggcagggccaggccagccctcgctc
atcatccagcttcagcagaaacagaatcgcatcacaccgattcagaagcctcagggtctg
gaccctgttgaactcttgcaagagagggaataccgtcttcaggccaggattgctcacaga
attcaggagctggagaatctgccaggatcattgccaccagatctgcggactaaagctacg
gtggagctgaaggccttaagactgctcaacttccagcggcagctgaggctcgatgttgta
gcctgcatgcggcgagacacaactctggagacggccctgaactctaaagcctacaagcgc
agcaagagacagacacttcgagaagctcgcatgacagagaaactagagaagcagcaaaag
atcgagcaggagaggaagcgccgccagaaacaccaggaataccttaacagcattctgcag
catgcaaaagatttcaaggaatatcacagatccatctctggaaaaatccaaaagctgtca
aaagccatcgcaacatggcacaccaacacagagagagagcagaagaaggagacggaaaga
atcgagaaagagaggatgaggaggctgatggctgaggatgaagaaggttacaggaagctg
attgatcagaagaaggacaagcgtctggcctaccttcttcagcagacagatgaatacgta
gccaacctgactgagcttgtctatgaacacaaggctgctcaagctgccaaagagaagaaa
aagaagagaaagaagaaaaagaaggaagctggcgattctgagggaatgggagccattggg
cctgatggagagctcatagatgagaacagccagatgagtgagctgccagtcaaagtcatt
cagacagagacggggaaagtgctacaggggacagatgcccccaagtccagtcagttagag
gcctggctcgagatgaaccctggctatgaagttgctccacggtcagacagtgaagagagt
ggctcagaatttgaagaggaggatgatgaagaggtgatctccagagctgaatcagaagaa
aagaaagtcatcgatcccaacagtgatgaagtatctgaaacggcagccaagcacatcata
gagtcagctaaacaggatgtggatgatgagtacagtgttcaggcgggacagaccagctcc
cagtcttactatggagtggcccacgcggtcatagagagggtggagaaacagtccacgctt
ctgatcaatgggaccctcaaacagtaccagatccagggtctggaatggatggtgtctctg
tacaacaacaacctgaatggtattctggctgatgagatgggactgggcaagaccattcag
actatcgcactcatcacatatctgatggaacacaagaggctcaacgggccatacctcatc
attgtaccgctctcgactttgtccaactgggtttatgagctggacaagtgggcaccaagt
attgtgaaaattgcctacaagggcacaccatcaatgcggaggtctttggtgccgcagctc
cgcagtgggaagtttaatgtccttataaccacctacgagtatatcatcaaagacaagcac
attctcgccaagattcgctggaaatatatgatagtggacgagggtcaccgcatgaagaac
catcactgcaagctcacacaggtgttgaacactcactatgttgctcccaggaggctttta
cttactggaacacctctgcagaacaaattaccggagctctgggctttgctcaacttcctt
ttgcccaccatcttcaaaagctgcagcacctttgagcagtggttcaatgctccttttgca
atgacaggagagagggtggatctaaatgaagaggagaccatccttatcattcgtcgtttg
cataaggtgttacgccccttccttctgcgcagactgaaaaaagaggtggagtctcagtta
cctgagaaggtggagtatgtcatcaaatgtgacatgtcagccatccagaaggttttgtac
agacacatgcagggcaaagggatcttgctcactgatggatcagagaaagacaagaagggt
aaaggaggacataagaccttaatgaacaccataatgcagctgaagaagatctgtaaccat
ccctacatgtttcaacacatagaggaatcctttgctgagcacttgggatatccaaatggt
attatcaacggccccgacctgtatcgtgcttctggcaagttcgaattactggaccgcatc
ctacctaagctgaaggccaccaatcacagagttcttctgttctgtcagatgacctccctc
atgaccatcatggaggattattttgcctaccgtaacttcctttatctgcgtctggatgga
actacgaagtctgaggatcgtgcttcacttttaaagaaattcaatgatgaaggctcacag
tatttcatcttcctgctgagcacaagggcaggaggtctgggactcaacctgcaagctgcg
gacaccgttgtgatctttgacagtgactggaacccccaccaggacttgcaggcacaggac
cgagcccatcgtatcggccagcagaacgaagtacgcgtcctgcgtttgtgcactgttaat
agtgtggaggagaagattctagcagcggccaagtataaactgaacgttgatcagaaggtc
attcaagccggcatgtttgatcagaagtcctctagccatgagcgcagagccttcctgcag
gctattctggagcacgaggaacagaatgaggaggaagatgaagttccagatgatgaaact
ctcaatcaaatgattgctcgtaatgaggacgaatttgagcttttcatgcgcatggattta
gaccgtcgtcgagaggatgcacgcaaccctaagcgtaaacctcggctaatggaagaggat
gagctgccatcatggatcctaaaggatgatgctgaggtggagcggcttacctgcgaagag
gaagaggaaaagattttcggccgtggttctcgtcaccgcagagatgttgactacagcgac
acgttgacggaaaagcagtggctgagggctatagaggatggcaaccttgaggaaatcgag
gaggaaatacggctgaagaggcgcaagcgtaggagacacgtggacaaagacatgcggcgc
gaggacgcagagaaggccaagaaacgaagaggacgtcctccggcagagaagctctcccca
aatccacccaaactcacaaaacagatgaatgccatcgttgatacagtcatcaactacaga
gatgcatcaggccgtcagctcagcgaggtctttgtgcagctgccctccaggaaagagctc
cccgaatactatgaactgataaggaagccagtggacttcaagaagatcaaggagcgtgtg
cgtaatcataagtacagaagcgtgagcgacctggagaaagacgtcatgcttctttgtcac
aacgctcagacttataatctagagggctctcagatctatgaggactccattgttctccag
tcagtattcaagagtgcaagacaaaagattgctagggaggagagcgaagatgacagcaat
gatgatgacgatgacgaggaggaatcagaggaagagtccaagtcagtgaaggtgaaaatt
aagctgagtaaacgggacgaaagatgtcaggacaaaggcaagaagagaccaagtcgtgga
aaggccaagcccgtggtcagtgacgatgacagcgaggacgaccaggaagagaacttcaag
aggaaaacgagcagtcggaggggagccacagtgacgacgactgaggaggagatgagctga
DBGET
integrated database retrieval system
