Puntigrus tetrazona (Sumatra barb): 122348682
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Entry
122348682 CDS
T08985
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122348682 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122348682 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122348682 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122348682 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122348682 (col4a6)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122348682 (col4a6)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122348682 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122348682
NCBI-ProteinID:
XP_043100346
LinkDB
All DBs
Position
7:28577881..28646838
Genome browser
AA seq
1721 aa
AA seq
DB search
MKLWSFVLPVFLYAVSAQGGSKLQEPCAGRDCGGPCPCLPLKGSRGPPGELGQAGSSGPE
GFIGAPGPIGPKGEKGHVGRKGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGEPGDRVRDGFPGLSGSPGPPGQKGQKGEPFYTDVSEPNFFDKGSPGPVGFPGP
AGFSGPVGPRGPDGYDGPPGLPGPPGPPGSPGQGYKGEPGEKGDVGPPGLRGSPAVPFNA
PAISTINKGEKGDVGPPGDPGRPLVNGVVELVGFPKGDKGTKGDKGYDGAPGFPGRPGPP
GPFGYRGETGEKGILGLPGSRGPPGLNGPPGLPGFKGLSGSSGISGQQGFTGPKGERGDP
GPPGPIVDPAGGVKGPPGDPGFPGYPGITGDTGFLGLPGEPGPPGQPAFFTGRPGSSGFP
GGRGPKGPRGNPGRDSYGPEGLPGNQGFPGPPGLPGPPGSTSNLFSNGLPGFPGQPGPRG
FPGDRGFKGFSGENGDCNCLGGGTIGGQGPQGPPGPPGFVGLNGVKGEIGDLGFSGPRGP
QGFDGRTGERGIKGWKGEKGNSYIPQGRGQKGDMGQQGLPGPLGVSGNPGKDGSPGFPGQ
PGLPGESGFGVSGEKGFPGIPGFKGRPGDRGETGIGYPGVAGFKGSQGDPGFNGLPGTPG
PKGSPGDSCGQAGLNDASLEEGGTPLPCRIPGELGDPGYFGNPGVPGPKGQPASPGPNGR
PGFDGPKGERGEPGSGGQPGPQGFPGPRGDPGLPGITNAGLPGPPGRDAFPGLAGNKGEP
GVVLRATPGAPGSPGRPGEPGDKGQPGVPGFLGRPGNDGRNGFPGIKGERGVDGFPGPVG
PIGPPGEIPSGGVPGPRGPPGATGFDGSPGCQGFPGLKGVRGDPGPPGPVGIKGIPGLPG
IPGSQGFRGPPGSPGVGARSSISGRQGIKGETGSFGLLGFPGLPGTPGVPGGPGVKGLPG
FPGQDGLPGGTGSRGAKGERGTPGLPGQSPVLTVEQLEKGQKGEAGGGGLPGFPGPRGDK
GFPGLPGRQGFPGLPGVADQAKGFPGQPGFPGIPGSTGFPGPKGSPGVMGFPGLPGLTGD
NGVPGVQGFPGTVGQSGGKGEKGDSYELSGPPGPKGSIGNTGFPGGPGLPGKVGDPGFPG
SFGFQGQKGLPGDPGTPGFSGSPGLPGIRGLPGYPGRKGRDGDLGRPGVPGSPGEKGFPG
SPGLGGLNGLPGSKGLSGVPGVTEGGRTGAPGVNGQKGERGSSQPGALGRPGEKGSRGEP
GASGFRGFPGNPGLPGPPSPSNIPGPPGDPGLPGLDGREGPFGPPGPPGPPGPGTVQGDR
GDTGLPGRPGIPGPRGEPGGFGVPGLQGSPGLKGQRGDPGLNGVRGPPGRVGEPGNYGWN
GPKGLQGFPGPKGRPGILVPHNKTGISPLGELGTSGLDGSVGQTGIPGLPGSPGFPGPKG
LRGPVGRLGPVGAAGSPGAFGDPGPSGIQGPTGTQGARGPTGVQGLPGPPARSIGIGYTL
VKHSQSNQVPMCPQGMARLWEGYSLLYVEGQEKAHNQDLGLPGSCLTHFSTIPFLYCTVD
EICHYASRNDKSYWLSTTAPIPMMPVADQQISQYISRCSVCEAPSQAIAIHSQDLSIPTC
PQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKY
SFWLTTVEQNEQFVQGPSQETLKGDEYRSRISRCQVCMKIL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttaccggttttcttgtatgcagtgtctgctcaaggggga
tcaaagctccaggagccgtgtgcaggccgggactgcggtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggccaccaggcgaacttggacaggcgggcagcagtggtcctgaa
ggtttcattggggccccaggcccaattgggcccaaaggagaaaagggccatgtaggacgc
aaagggccctctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggtcccccaggtttggat
ggctgtaatggcacacgaggtgagccaggcgacagagtgcgtgatggatttcctgggctt
tctggttctcctggacctcctggtcaaaaaggtcaaaaaggagaaccgttttatacagat
gtttctgaaccaaattttttcgacaaaggctctccaggtccagtaggatttccaggtcca
gcaggattttcaggtccagtggggcctagaggtccagatggatatgatggtccgccaggt
ctacctggtcctcctggacctccaggaagtccaggtcagggatacaaaggagagccagga
gaaaagggggatgttggtccaccaggactcaggggcagtccggccgttccgtttaacgca
ccagcaataagcactatcaacaaaggagagaagggagatgtgggcccgcccggtgaccca
ggccgcccactggtcaatggagtggtggagcttgttggctttccgaaaggagacaaagga
actaagggtgataaaggctatgatggtgctccaggttttcctgggagaccaggaccacca
ggcccatttgggtacagaggtgaaactggagaaaagggaatcctgggcttgccaggctca
aggggtccacctggtctgaacggtcctcctgggcttcctgggtttaagggcttatctggg
tcttctgggatttcaggacaacaaggttttactggcccaaagggcgaaagaggagaccca
ggtcctcctggaccgattgtggatccagcaggtggagttaaaggtcctccaggtgatcct
ggctttcctggttatccagggataactggagatacaggttttctagggcttcctggtgag
cctggtcctccgggacagcctgcttttttcacaggtcgtccaggcagctctgggttcccc
ggtggtcgtggacccaaaggcccgaggggaaacccaggtcgggattcttatggtcctgaa
ggtcttcctggaaatcaaggctttcctggacctccaggtctcccgggaccaccgggcagt
acatcaaacctgttctccaatggactaccaggttttcctggtcagcctggtccaagagga
tttcctggagacagaggctttaaagggtttagtggagaaaatggtgactgcaactgtttg
ggtggaggaacgattggtggacagggacctcaagggcctccagggcccccaggttttgta
ggactcaatggagtgaagggagaaattggtgacctaggcttctcagggccccgtggtcca
cagggctttgatggtcgtacaggtgaaagaggcattaaagggtggaaaggagagaaaggt
aattcttacatcccacaaggcagaggacaaaaaggtgatatgggacaacagggtcttcct
ggaccacttggagttagcggcaaccctggaaaggatggatctcctggcttccctggacaa
ccaggtctacctggggaatctggttttggggtgtctggagaaaaagggtttcctggtatt
ccagggttcaaaggtcgtcctggtgacaggggggaaactggtatcggctatcctggtgta
gctgggttcaaagggtctcaaggtgatcctggattcaatggtcttcctgggacacctgga
cctaaaggatctccaggtgacagctgtgggcaggcggggcttaatgatgcctctttggaa
gagggaggaacaccccttccctgtaggattcctggtgaactcggagatccaggatacttt
ggaaatcctggggtgccagggccaaagggtcagcctgcttccccaggaccaaatgggcgc
ccagggtttgatgggccaaagggtgagagaggagagccaggctctggaggtcagccagga
cctcaggggttccctggacctagaggagatccaggtttaccaggaataacaaatgctggc
ttaccagggcctccaggaagagatgcttttccaggcttggcaggaaataagggagaaccc
ggtgtggtgcttagggccactcctggagctccaggttctccagggagaccaggagagcca
ggagacaagggtcaacctggtgtgcctggttttctagggaggcctggtaatgatggacgc
aatggctttcctggcataaagggagaacgaggtgtggatggttttcctggtcctgtaggt
cccataggtccaccaggagaaatcccttccgggggtgttcctggtcccagagggccacct
ggagctactggatttgatggatctccaggctgccaaggtttcccagggctgaagggtgta
agaggagatccagggcctccaggtcctgttggaataaagggtataccagggcttcctggc
atcccagggtcacagggatttaggggacctcctggatcccctggcgttggagcacgttca
agcatatctggaagacaaggaataaaaggagagacggggtcttttggattgctggggttc
ccaggtttacctggtactcctggagtcccaggtggcccaggtgttaaaggtttacctggt
ttccctgggcaggatggcttacctggaggaactggatcaagaggagccaaaggggagcgt
ggcactcctggtcttccaggacaatctccagtgcttacagtagagcagctggaaaagggt
caaaaaggtgaagcaggaggtggtggactgcctggttttccaggaccaagaggtgataag
ggttttccagggttgcctgggcgtcaaggttttcctggattacctggtgttgcagaccaa
gcaaaaggttttcctggccagcctggattcccaggtattcctggctccactggcttccct
ggtcccaaaggttcacctggagttatgggcttccctggcttaccaggcctgactggtgac
aatggtgtgcctggggttcaagggttcccaggaactgtgggacaatctggtggcaaaggt
gagaaaggtgattcatatgaattatctggaccccctggaccaaagggttcgattggaaat
actggattcccaggtggtccaggacttcctggtaaagtaggtgatcctggtttcccagga
agttttggatttcaaggccagaaaggtttgccaggagacccaggaactcctggatttagt
ggctcaccaggcctcccaggcattaggggtctccctggttatccaggacggaagggtcgt
gatggagatttaggccgtcctggagttccaggttcaccaggagagaaaggttttccagga
tcacctggtttgggtggactcaatggtcttccaggatccaaggggttgtctggagttcca
ggtgtgactgaaggtggtcggactggagctcctggtgtgaatggccagaagggagagaga
ggctcatcacagcctggagcacttgggcgccctggagaaaaaggatccagaggagaacct
ggtgcctctggtttcaggggcttccctggtaatccaggcctccctggaccacctagtcct
tctaatatcccaggtcctcccggagatcctggacttccgggattagatggacgagaaggt
ccctttggccctcctggccctcctggtccaccaggccctggaacagtccaaggagacaga
ggagataccggacttcctggacgaccaggaataccaggaccacgtggagagcccggtggt
tttggagtgcctggattacaaggcagtcctggtcttaagggacaaagaggtgatcctggc
ttaaatggtgtacgtggaccaccagggcgtgttggagagccaggaaactatggctggaat
ggacccaaaggattacagggttttcctggtcctaagggacgtccaggtattttggtccca
cataacaaaaccggcattagtccattgggggaactgggcacatcaggtcttgatgggtct
gttggtcagacaggaataccaggccttccaggtagtccaggattcccaggtcccaaagga
ctcagagggccagtgggtagacttggtcctgttggagcagcaggatctcctggagctttt
ggtgaccccggaccttcaggaatccaaggacccacaggaacccaaggagcccgtggccca
acaggagtgcaaggtcttcctggtccaccggcacgcagtattggtatcggttatactttg
gtgaagcacagtcagtccaaccaggtgcccatgtgtcctcaaggcatggccaggctgtgg
gaaggctacagtttgctttatgtggagggacaggagaaagcacacaaccaggacctggga
ttgcccggctcctgtttgacgcatttcagcaccatccccttcctgtactgcacagtcgat
gagatctgccactatgctagtcgtaatgacaaatcctattggctgtccaccacagcaccc
attcccatgatgcccgtggcagatcagcagatatctcagtacattagccgctgctcagtg
tgtgaagctccttctcaagctatcgctatccatagccaagacctcagcataccgacctgc
cctcagggctggagaagtctgtggattggttactccttccttatgcacacagccgctggt
gcagaaggaggtggtcagtcattggtttctcccggttcttgtctggaggatttccgtgcc
acccccttcattgagtgcaacggaggccgaggcacctgccactactttgccaacaagtac
agtttctggttgaccacggtagagcagaacgaacagttcgtccagggtccttcccaggag
acgctgaagggagatgagtaccggtcacgcatcagtcgctgtcaagtctgcatgaagatc
ttgtag
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