Puntigrus tetrazona (Sumatra barb): 122348682
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Entry
122348682 CDS
T08985
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04382
Cornified envelope formation
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122348682 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122348682 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122348682 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122348682 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122348682 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122348682 (col4a6)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122348682 (col4a6)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122348682 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122348682
NCBI-ProteinID:
XP_043100346
LinkDB
All DBs
Position
7:28577881..28646838
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AA seq
1721 aa
AA seq
DB search
MKLWSFVLPVFLYAVSAQGGSKLQEPCAGRDCGGPCPCLPLKGSRGPPGELGQAGSSGPE
GFIGAPGPIGPKGEKGHVGRKGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGEPGDRVRDGFPGLSGSPGPPGQKGQKGEPFYTDVSEPNFFDKGSPGPVGFPGP
AGFSGPVGPRGPDGYDGPPGLPGPPGPPGSPGQGYKGEPGEKGDVGPPGLRGSPAVPFNA
PAISTINKGEKGDVGPPGDPGRPLVNGVVELVGFPKGDKGTKGDKGYDGAPGFPGRPGPP
GPFGYRGETGEKGILGLPGSRGPPGLNGPPGLPGFKGLSGSSGISGQQGFTGPKGERGDP
GPPGPIVDPAGGVKGPPGDPGFPGYPGITGDTGFLGLPGEPGPPGQPAFFTGRPGSSGFP
GGRGPKGPRGNPGRDSYGPEGLPGNQGFPGPPGLPGPPGSTSNLFSNGLPGFPGQPGPRG
FPGDRGFKGFSGENGDCNCLGGGTIGGQGPQGPPGPPGFVGLNGVKGEIGDLGFSGPRGP
QGFDGRTGERGIKGWKGEKGNSYIPQGRGQKGDMGQQGLPGPLGVSGNPGKDGSPGFPGQ
PGLPGESGFGVSGEKGFPGIPGFKGRPGDRGETGIGYPGVAGFKGSQGDPGFNGLPGTPG
PKGSPGDSCGQAGLNDASLEEGGTPLPCRIPGELGDPGYFGNPGVPGPKGQPASPGPNGR
PGFDGPKGERGEPGSGGQPGPQGFPGPRGDPGLPGITNAGLPGPPGRDAFPGLAGNKGEP
GVVLRATPGAPGSPGRPGEPGDKGQPGVPGFLGRPGNDGRNGFPGIKGERGVDGFPGPVG
PIGPPGEIPSGGVPGPRGPPGATGFDGSPGCQGFPGLKGVRGDPGPPGPVGIKGIPGLPG
IPGSQGFRGPPGSPGVGARSSISGRQGIKGETGSFGLLGFPGLPGTPGVPGGPGVKGLPG
FPGQDGLPGGTGSRGAKGERGTPGLPGQSPVLTVEQLEKGQKGEAGGGGLPGFPGPRGDK
GFPGLPGRQGFPGLPGVADQAKGFPGQPGFPGIPGSTGFPGPKGSPGVMGFPGLPGLTGD
NGVPGVQGFPGTVGQSGGKGEKGDSYELSGPPGPKGSIGNTGFPGGPGLPGKVGDPGFPG
SFGFQGQKGLPGDPGTPGFSGSPGLPGIRGLPGYPGRKGRDGDLGRPGVPGSPGEKGFPG
SPGLGGLNGLPGSKGLSGVPGVTEGGRTGAPGVNGQKGERGSSQPGALGRPGEKGSRGEP
GASGFRGFPGNPGLPGPPSPSNIPGPPGDPGLPGLDGREGPFGPPGPPGPPGPGTVQGDR
GDTGLPGRPGIPGPRGEPGGFGVPGLQGSPGLKGQRGDPGLNGVRGPPGRVGEPGNYGWN
GPKGLQGFPGPKGRPGILVPHNKTGISPLGELGTSGLDGSVGQTGIPGLPGSPGFPGPKG
LRGPVGRLGPVGAAGSPGAFGDPGPSGIQGPTGTQGARGPTGVQGLPGPPARSIGIGYTL
VKHSQSNQVPMCPQGMARLWEGYSLLYVEGQEKAHNQDLGLPGSCLTHFSTIPFLYCTVD
EICHYASRNDKSYWLSTTAPIPMMPVADQQISQYISRCSVCEAPSQAIAIHSQDLSIPTC
PQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKY
SFWLTTVEQNEQFVQGPSQETLKGDEYRSRISRCQVCMKIL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttaccggttttcttgtatgcagtgtctgctcaaggggga
tcaaagctccaggagccgtgtgcaggccgggactgcggtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggccaccaggcgaacttggacaggcgggcagcagtggtcctgaa
ggtttcattggggccccaggcccaattgggcccaaaggagaaaagggccatgtaggacgc
aaagggccctctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggtcccccaggtttggat
ggctgtaatggcacacgaggtgagccaggcgacagagtgcgtgatggatttcctgggctt
tctggttctcctggacctcctggtcaaaaaggtcaaaaaggagaaccgttttatacagat
gtttctgaaccaaattttttcgacaaaggctctccaggtccagtaggatttccaggtcca
gcaggattttcaggtccagtggggcctagaggtccagatggatatgatggtccgccaggt
ctacctggtcctcctggacctccaggaagtccaggtcagggatacaaaggagagccagga
gaaaagggggatgttggtccaccaggactcaggggcagtccggccgttccgtttaacgca
ccagcaataagcactatcaacaaaggagagaagggagatgtgggcccgcccggtgaccca
ggccgcccactggtcaatggagtggtggagcttgttggctttccgaaaggagacaaagga
actaagggtgataaaggctatgatggtgctccaggttttcctgggagaccaggaccacca
ggcccatttgggtacagaggtgaaactggagaaaagggaatcctgggcttgccaggctca
aggggtccacctggtctgaacggtcctcctgggcttcctgggtttaagggcttatctggg
tcttctgggatttcaggacaacaaggttttactggcccaaagggcgaaagaggagaccca
ggtcctcctggaccgattgtggatccagcaggtggagttaaaggtcctccaggtgatcct
ggctttcctggttatccagggataactggagatacaggttttctagggcttcctggtgag
cctggtcctccgggacagcctgcttttttcacaggtcgtccaggcagctctgggttcccc
ggtggtcgtggacccaaaggcccgaggggaaacccaggtcgggattcttatggtcctgaa
ggtcttcctggaaatcaaggctttcctggacctccaggtctcccgggaccaccgggcagt
acatcaaacctgttctccaatggactaccaggttttcctggtcagcctggtccaagagga
tttcctggagacagaggctttaaagggtttagtggagaaaatggtgactgcaactgtttg
ggtggaggaacgattggtggacagggacctcaagggcctccagggcccccaggttttgta
ggactcaatggagtgaagggagaaattggtgacctaggcttctcagggccccgtggtcca
cagggctttgatggtcgtacaggtgaaagaggcattaaagggtggaaaggagagaaaggt
aattcttacatcccacaaggcagaggacaaaaaggtgatatgggacaacagggtcttcct
ggaccacttggagttagcggcaaccctggaaaggatggatctcctggcttccctggacaa
ccaggtctacctggggaatctggttttggggtgtctggagaaaaagggtttcctggtatt
ccagggttcaaaggtcgtcctggtgacaggggggaaactggtatcggctatcctggtgta
gctgggttcaaagggtctcaaggtgatcctggattcaatggtcttcctgggacacctgga
cctaaaggatctccaggtgacagctgtgggcaggcggggcttaatgatgcctctttggaa
gagggaggaacaccccttccctgtaggattcctggtgaactcggagatccaggatacttt
ggaaatcctggggtgccagggccaaagggtcagcctgcttccccaggaccaaatgggcgc
ccagggtttgatgggccaaagggtgagagaggagagccaggctctggaggtcagccagga
cctcaggggttccctggacctagaggagatccaggtttaccaggaataacaaatgctggc
ttaccagggcctccaggaagagatgcttttccaggcttggcaggaaataagggagaaccc
ggtgtggtgcttagggccactcctggagctccaggttctccagggagaccaggagagcca
ggagacaagggtcaacctggtgtgcctggttttctagggaggcctggtaatgatggacgc
aatggctttcctggcataaagggagaacgaggtgtggatggttttcctggtcctgtaggt
cccataggtccaccaggagaaatcccttccgggggtgttcctggtcccagagggccacct
ggagctactggatttgatggatctccaggctgccaaggtttcccagggctgaagggtgta
agaggagatccagggcctccaggtcctgttggaataaagggtataccagggcttcctggc
atcccagggtcacagggatttaggggacctcctggatcccctggcgttggagcacgttca
agcatatctggaagacaaggaataaaaggagagacggggtcttttggattgctggggttc
ccaggtttacctggtactcctggagtcccaggtggcccaggtgttaaaggtttacctggt
ttccctgggcaggatggcttacctggaggaactggatcaagaggagccaaaggggagcgt
ggcactcctggtcttccaggacaatctccagtgcttacagtagagcagctggaaaagggt
caaaaaggtgaagcaggaggtggtggactgcctggttttccaggaccaagaggtgataag
ggttttccagggttgcctgggcgtcaaggttttcctggattacctggtgttgcagaccaa
gcaaaaggttttcctggccagcctggattcccaggtattcctggctccactggcttccct
ggtcccaaaggttcacctggagttatgggcttccctggcttaccaggcctgactggtgac
aatggtgtgcctggggttcaagggttcccaggaactgtgggacaatctggtggcaaaggt
gagaaaggtgattcatatgaattatctggaccccctggaccaaagggttcgattggaaat
actggattcccaggtggtccaggacttcctggtaaagtaggtgatcctggtttcccagga
agttttggatttcaaggccagaaaggtttgccaggagacccaggaactcctggatttagt
ggctcaccaggcctcccaggcattaggggtctccctggttatccaggacggaagggtcgt
gatggagatttaggccgtcctggagttccaggttcaccaggagagaaaggttttccagga
tcacctggtttgggtggactcaatggtcttccaggatccaaggggttgtctggagttcca
ggtgtgactgaaggtggtcggactggagctcctggtgtgaatggccagaagggagagaga
ggctcatcacagcctggagcacttgggcgccctggagaaaaaggatccagaggagaacct
ggtgcctctggtttcaggggcttccctggtaatccaggcctccctggaccacctagtcct
tctaatatcccaggtcctcccggagatcctggacttccgggattagatggacgagaaggt
ccctttggccctcctggccctcctggtccaccaggccctggaacagtccaaggagacaga
ggagataccggacttcctggacgaccaggaataccaggaccacgtggagagcccggtggt
tttggagtgcctggattacaaggcagtcctggtcttaagggacaaagaggtgatcctggc
ttaaatggtgtacgtggaccaccagggcgtgttggagagccaggaaactatggctggaat
ggacccaaaggattacagggttttcctggtcctaagggacgtccaggtattttggtccca
cataacaaaaccggcattagtccattgggggaactgggcacatcaggtcttgatgggtct
gttggtcagacaggaataccaggccttccaggtagtccaggattcccaggtcccaaagga
ctcagagggccagtgggtagacttggtcctgttggagcagcaggatctcctggagctttt
ggtgaccccggaccttcaggaatccaaggacccacaggaacccaaggagcccgtggccca
acaggagtgcaaggtcttcctggtccaccggcacgcagtattggtatcggttatactttg
gtgaagcacagtcagtccaaccaggtgcccatgtgtcctcaaggcatggccaggctgtgg
gaaggctacagtttgctttatgtggagggacaggagaaagcacacaaccaggacctggga
ttgcccggctcctgtttgacgcatttcagcaccatccccttcctgtactgcacagtcgat
gagatctgccactatgctagtcgtaatgacaaatcctattggctgtccaccacagcaccc
attcccatgatgcccgtggcagatcagcagatatctcagtacattagccgctgctcagtg
tgtgaagctccttctcaagctatcgctatccatagccaagacctcagcataccgacctgc
cctcagggctggagaagtctgtggattggttactccttccttatgcacacagccgctggt
gcagaaggaggtggtcagtcattggtttctcccggttcttgtctggaggatttccgtgcc
acccccttcattgagtgcaacggaggccgaggcacctgccactactttgccaacaagtac
agtttctggttgaccacggtagagcagaacgaacagttcgtccagggtccttcccaggag
acgctgaagggagatgagtaccggtcacgcatcagtcgctgtcaagtctgcatgaagatc
ttgtag
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