Puntigrus tetrazona (Sumatra barb): 122348772
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Entry
122348772 CDS
T08985
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122348772 (focad)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122348772 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
DUF668
Motif
Other DBs
NCBI-GeneID:
122348772
NCBI-ProteinID:
XP_043100555
LinkDB
All DBs
Position
7:12550559..12591598
Genome browser
AA seq
1807 aa
AA seq
DB search
MTETLKTRFEFPSSLIQAQAVRTLVTAVLKEKGQNERICQTTAKGQALESLWEQCSSDSS
VIRSACCDALVLLVEQGHADLSYVLNTTLNLLPSARNVQGLIKVVGRLLQIQASQRDNGA
SFTCPYSIRTFPHPYITVLENRPDCWPALLQEIDDFLQLATDKDEPAYVEMLVPFLRYLY
CEPQRLSENALLRHSFLRVLLHPRGAPEPDSPQEKRASSTRVVRELIRSLFDLLPYMLVD
SVTAVVEFSSFAESLTLALLTDPGFWRKELTELALQLLCACQLSVHLGGELMSLLHTLHQ
IIPAQAEELSPEQVIMGISLLLLSASTSQQTALLELAVKFVPPDVPPPWGASLLVMPLLQ
VLSCSSLMEALTDSETHTKNLKLANSLLQTVQRDPADRKEGSTQLSLPLSVWYNELQVAT
SVLHRISMDSMSTVEWLYSLQSSLSVCEHVPDTVCLLVSHVIVSRHGDLCKLALDAAAAV
AEADPAKVPCLLPVLMFKLGRVSDPALSHSVLHTLPKLGTHKFCIPQVLHVLQTLGSSSR
LRPVALRLLTLLWQKQDRVYPDLQRLMSQLEKSSVVMGKDTQWEQILARAACVRDICRER
PYQHGGDMLAAITDTLMQFSRKDQATPAALALQGLQELCRAEVVDIISTWKALSPKLCFD
TRPLVLKATAELLALVPALNVKTEEYEKFRNEAVSVLWGHALSQDPEVASQGYKALSEYP
EPSHTVLHLPEQVRPVPKQPEEEEEGKENENEKDEDISVPGVSYVKLVCLTPQPVLPALE
TFLTALVRQEMNQMPRGVYHSALSGGNLRSDQGKTASGIPSFMLKTYEKNKQPGLKPGLA
AGLLLCYDLPVQTDKDGRPITRFLVSRGRSYQQMLATFIHEVNIQPSEWHRSLLLPQAWR
GFMSRAYHAALQGRKAELEMLQKQGKESLEELQYKQHYAWLWVRDQLTDVVKSAAKDSPV
VQGNSILALSGLAVVLTRYESNLPTQSESGLEVGPDILPTVHWLSMVIDTLLSIVSSNSN
PKGQVFPWFIHRSYSGENTASLIARSCAALGLALLVPVLVTSRKENVPAILGTLEAGLPG
SPTAEESQALQFHSGLALGMFLAWLHDERVSDISGQSVPELLMKHLERLEDCCFNPNLEY
NAGCVLGVGLVLSSLSSSSQSERDRVHVSLMLDRLLQTLQDSSNMSRMLQEVLAYSVACV
GVSAFSTGIIEASKAEESMNTLRTLTEESQQTPGFALALGLTVFGLSSFGHGKAVDIQPR
LQAAWTKILLAEGCPTMQRLSALNGLIALVGSETSLIQLKSESEESSQQQGRLNEVIRAI
TQIITFSGTIGLQSNGACLLGHLHLAHISSSHSRTAVPQDFGYLPEKSVIRASVDFITEA
GRKGPEFTPPHQVKTLLAALETVGGSFQYPPVNWSAVLSPLMRLGFGEEVQHHCLALAAH
QAQSSQSASLFLAIWLVPPLVHSLSLHTRASLYECLSSWMKHVAEDKLQVYVVSLAVQQF
NPDTRPQRLPMCLSILTGLAKAMALPNPPQNCWTALCSTTEKIYKLLPDNIPAGEVDLYE
AMCSCLSELSDTEIDRIVKVTEANVEKTAFILSYLTSKGRVPLLGLNDVISTILQVGNKK
RISWLLLQALHQSRFAASPNTGVSKRMEWLLELMGHIRNVAYGSPSVKCVSVIEGTDFLL
GLFAAAVVSWADHCAPLLVGIRARWFPWQQSSQTTALSHDLYVNPDGTELLLKACLLGIP
CSIKQLLAKEPWKSQSQKFIDWLFSITEGPKLGFSETALLTAKAMLMALRSSSEFKKKGV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactttgaagaccaggtttgagttccccagctccctcattcaagctcaggct
gtgaggacgctggtcactgcagtgctgaaagagaaaggccaaaatgaaaggatttgtcag
accacagctaaaggtcaagcgctggagtctctgtgggagcagtgcagcagtgacagtagc
gtcatccgctcggcctgctgtgatgctctggtgctactcgtagaacagggacatgcggat
ctatcttatgttctcaacaccaccctaaacctcctgccctcggcgcggaatgttcaaggg
ctgatcaaagtggtcgggaggctgctacagatccaggcaagtcagcgggataacggcgca
agcttcacctgtccatattcaattaggaccttccctcacccttacatcacagttctggaa
aaccgccccgactgctggcccgctctgctccaggaaattgatgacttccttcagctggct
acagacaaagatgagccagcatatgtggaaatgttggtaccatttctccgttacctgtac
tgcgagccccagaggttgtcagaaaatgccctgctcagacacagcttcctcagggtcctg
cttcacccgcgaggggcgcctgagcccgacagcccgcaggaaaagagggcgtctagtact
agggtggtccgtgagctaatacgcagcctctttgacctgcttccatacatgctggtggac
agtgtaactgcagtggttgagttcagctcatttgctgaatctctgacactggctctgctc
accgatccaggcttctggagaaaggaactgaccgagctggctcttcagcttctgtgcgcc
tgtcagctcagtgttcatctaggaggagaactgatgtctctccttcacacgctccaccag
ataataccagcacaagcagaggaactctcgcctgagcaagtgatcatgggaatctccctg
ctactgctaagtgcctccacctctcaacaaactgccctcctagagctcgctgtgaagttt
gtccctcctgatgttcctccaccctggggagcgtctttgctggtgatgcccttgttacaa
gtattgtcctgctccagcctcatggaagctcttacagactcagaaacgcacacaaagaac
cttaaactggccaattcactgttgcagacggttcaaagagatcctgcagatcgaaaagag
ggctccacgcagctgagtttgcctctcagcgtttggtacaacgagcttcaagtggccacc
agcgtcttacaccgaatttccatggactccatgtctactgtagaatggctttactccctg
cagtcatcgctgtctgtctgtgagcacgtcccagatactgtctgtctcctggtgtcccat
gttatcgtcagcaggcacggggatctctgcaagttagcgctggacgctgcggccgccgtc
gctgaggccgatcctgctaaggtgccatgtctacttcccgtcctgatgtttaaactaggc
agagtgtctgatccggctttgtctcactctgttctccacactctgccaaaactgggaaca
cacaagttctgtatcccgcaggtgcttcacgtcctccaaactctgggcagttcatccaga
ctgaggcctgtggctctgcgcctcttaactctgttatggcaaaaacaggatcgtgtgtat
ccagacctgcagagactgatgtcacagcttgaaaaatcctcagtggtcatgggaaaagat
acacagtgggagcagatattagccagagcagcctgcgtcagagacatctgcagagagagg
ccgtaccagcatggaggagacatgctggctgccatcaccgacacgctgatgcagttctcc
aggaaggatcaggccactcctgctgctctggcactgcagggcttacaggagctctgtaga
gctgaggtagttgatatcatctctacgtggaaggctctctctcctaagctgtgctttgac
accagacccctggttctgaaggccacagctgaacttctggcactagtgcccgctctaaat
gtcaaaactgaagaatatgagaagttcagaaatgaggcagtcagtgttctatggggccac
gctcttagtcaggacccagaggttgcaagtcaaggttataaagcgctctccgagtaccct
gaaccatctcacaccgtcctacacttaccagagcaggtcagacccgtaccaaagcagcct
gaagaagaggaagaagggaaagaaaatgagaatgagaaggatgaagatatttcagtacca
ggggtgtcatatgtgaagctagtttgtcttacaccacagcccgttttaccagcccttgag
accttcctaacggctctagtcaggcaggagatgaaccaaatgccccgtggcgtgtaccat
tcagctctgagtggagggaatttgcgctctgaccagggaaaaactgcatctggaattcct
tctttcatgctgaaaacatatgagaagaacaagcagccgggtctaaaacctggcttagca
gctgggcttctactgtgttatgaccttcctgttcaaactgacaaagatggacgaccaatc
acacgctttcttgtcagtagagggcggagttatcaacaaatgttagccacctttattcat
gaggtgaacatccagccctctgaatggcatcgctctctgctcttgccccaggcctggcgg
ggcttcatgagccgggcttaccatgcagccctccagggtcgaaaggcagagctggagatg
ctacagaaacagggtaaagagagcctggaggaactgcagtacaaacagcactatgcctgg
ctctgggtcagagaccaactgactgatgtggtcaaatctgccgccaaagatagtccggtt
gttcaaggtaattctatcttggcattaagtggcctggctgtcgtcttaaccagatatgag
agcaaccttcctacacagtctgaaagtggacttgaggtgggtccggacatccttcccaca
gttcattggctgtcgatggtgattgacacgctgctcagcattgttagcagtaacagtaac
cctaaaggacaagtcttcccatggttcattcatcgctcgtactcgggtgagaacacagcg
agtttgatcgcgcgctcctgtgctgctctgggtctggcgttgctggtgccggtgctggtg
acctcacgaaaagaaaacgttcccgctatcctgggcacgctagaggctggactgccagga
tcgcccaccgcggaggaatctcaggcgctgcagtttcatagcggcctggctctgggcatg
tttctagcgtggctgcatgatgagagggtcagtgatatatcgggtcagtcggtgccagag
ctgctgatgaagcatctggaacgactcgaagattgctgctttaatcccaatctggagtat
aatgctggttgtgtgttaggtgttgggttggtactcagttctctcagtagcagtagtcag
tctgaacgggaccgtgtgcatgtgtctctcatgctggacagactcttgcagaccctgcag
gacagcagcaatatgagccgcatgctgcaggaggttttggcctattctgtggcatgtgtt
ggtgtttcagcatttagcacaggcattattgaggccagtaaggccgaggaaagcatgaac
acactccgcaccctaacagaggaaagccaacagacaccgggctttgctttggcgttggga
ctgaccgtgtttggactgtcttcttttggtcatggtaaagcagtggacatccaacctcgt
ctgcaggccgcctggaccaagatactgctggcagagggttgtcccacaatgcagaggctg
tctgccctcaacggactgatcgcattagtgggatcagagacatctctcattcagctgaag
agcgaatcagaggagtcctcacagcagcagggcagactgaacgaggtcatccgagccatt
acacagatcattactttttcaggaacaataggtctgcagtctaatggagcatgtctgctt
ggacacctgcatctggcccacatatccagcagccacagccgaaccgcagttcctcaagac
tttggttatctcccagagaaaagtgtcatccgagcttcagtagacttcatcactgaggca
ggaaggaaaggacctgagttcactcctccacaccaagtgaagacgctgctggccgcttta
gagacggtcggtggaagcttccagtatcctccagtcaactggagcgccgtcctctctccg
ctgatgagacttggctttggtgaggaggtgcagcatcactgtttagcgttagctgcccat
caggcccagtcttcccagagtgcctcgcttttcctcgccatctggcttgtgcctcccctg
gttcacagtctgagtctccacaccagggcttctctctacgagtgcctgagctcctggatg
aagcacgtggctgaagacaaactgcaggtgtatgtggtcagtctggccgtccagcagttt
aacccggacacacgtcctcagcgcctgcccatgtgtctgtccatcctgaccggtctggcc
aaagccatggcgctcccaaacccgccacaaaactgctggaccgccctgtgctctaccact
gaaaagatctataagctcttacctgataacataccggctggtgaggtggacctgtatgaa
gccatgtgttcatgtctgtctgaactgagcgacactgagatagaccgcatagtcaaagtc
actgaggctaatgttgaaaaaacagcattcatcctatcctacttgacctctaaaggcaga
gtccctctgctcggactcaatgatgtcatcagtaccatcctccaggtgggcaataagaaa
cgaatcagctggcttctcctgcaggccctccaccaatcacggttcgctgctagtcccaac
accggggtctccaaacgaatggagtggcttttggagttaatgggccacatcaggaatgta
gcatacggatctccttctgttaaatgtgtcagtgttatagagggcacagatttcctcctt
ggtttgtttgctgcagcggtggtgtcttgggctgaccactgtgccccgcttctcgttggc
atcagggcccggtggtttccctggcaacagtcctctcagacaacagccctgtcccatgac
ctctatgtcaaccctgatggcaccgagctgttgctcaaagcctgcttactcggaatccca
tgcagcataaagcaactactcgccaaagagccgtggaagtcccagtcacagaagttcatc
gactggctcttcagtattacagaaggccctaaactaggtttctctgagactgccttactt
acagcgaaagcgatgctaatggctcttagatccagctctgagttcaagaagaagggtgtg
tggaccagggcgtacggctggtga
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integrated database retrieval system