Puntigrus tetrazona (Sumatra barb): 122349124
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Entry
122349124 CDS
T08985
Symbol
patl1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122349124 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122349124 (patl1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122349124 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
122349124 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122349124
NCBI-ProteinID:
XP_043100994
LinkDB
All DBs
Position
1:complement(25857638..25863787)
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AA seq
722 aa
AA seq
DB search
MFHFQGFDDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDAWSEDVV
HGAESASSSSSSVDLPPAAAMPTLGPPRPSSSXPALPGMERTGGGDLAESLTRLILGSDP
AIAGVGTARSDRSRLPPMLSGPPPKPSALAEQSSLLLSYQQQQQLMHRGXAPLPQINSHS
IWENNMGFSPVSSGLVTQKEDKTLMSIIKEVGLPNRPPALSREEGRDLSERXPPPRSCSP
VIGSPPVRAVPIXTPPKQPMSQVLQSNNHPSAIHIEPLCHALPPPFPPVPNNLLSITNSP
LSHPPFSAGVGPVLSQLQRAQLLNSQVGQFSRGPAXPLLQGSLGGFRPFFGQSGPRMGPH
GPPLDHAPSSHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGERKNRDPYSNLMTQREK
EWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTY
RPVQFVASLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLL
LEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRMSDEQCLMIMSVRVRK
RLISRLLPFLPETQAATVVMGIARNLPALAKKDKQDQVLCWLVEPVAAVIQSMSSTSLTD
LLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRCRARFISPAAM
LV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgttccatttccagggttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacacttttggtgcaggggccatcgatgat
gattggcaggaggagcatgcccgcctcgcagagcttgacgcatggtccgaggacgtcgtg
catggagcggagagcgcctcctcctcctcctcctccgttgacctccctcccgctgcagca
atgcccactcttggccctcctcgaccctcctcttctnncccggctttacctggcatggag
cgaacgggaggcggtgacctggcggagtcgctgactcggctcatcttgggctcggatcct
gctatcgccggagtgggcaccgccaggtcagacagatcccggcttcctccgatgctgtcc
ggtccgcctcctaagccctcagcattggctgaacagtcttctctgctgctgagctaccaa
cagcagcagcagctcatgcacagagggncggctcctcttccacagataaactctcacagt
atttgggagaacaatatgggcttcagtcctgttagttctggactagtcactcaaaaagag
gacaaaacgcttatgtccattatcaaagaggtggggcttcctaatcgtcctcctgcactc
agcagagaagaagggcgagatttgtcagaaaggnttccgcctcctcgctcctgctctcct
gtgattggaagtccacctgtaagggctgtacctatcngaacgcctccgaaacagcccatg
agtcaggttctacagtcaaataatcacccttcagccattcacattgagcctctgtgccac
gcgctaccccctcccttcccgcctgtccccaacaacctcctcagcatcactaattcaccg
ctgtctcatcctccgttctctgctggtgttggtcctgttctgtctcagttacagagagcc
caacttctcaactctcaggttggtcagttctcacgtggtccagctnccccattattacag
ggaagtctcgggggtttcaggccgttcttcgggcagtctggtcctagaatgggtccccat
gggccacctctcgaccacgccccatcctcacacaacaccacccacctccacccacagcat
cgcagaatgctcaaccagaggatgcagaacagaggcttgggcgatcacgtcggagggaga
ggtgttggagaaaggaaaaacagagatccttacagcaatctgatgacgcaaagagagaag
gaatgggtagcgagaatccaaatgatgcagcttcaaagcaccgatccatatctggatgac
tactattaccagaattactatgaaaaaatggagaagcgtcaagagcgggacagagacaac
aggaaggagcacaccaccaaactcatcactcctcaagtggctaaactggagcacacctat
cggccagtgcagtttgtcgcctcgttaggaaagctcaccgtctccagtgtgaacaatcca
aggaaaatgattgatgccgtggtgacaactcgtagtgatgatgaggaaaaaagagaaaag
caagtgtggaacaaaagacggcaaatcctttacactgtggagaagatgtacagtctatta
ttagaagtgcaagactttgagaagaagttcttgcagacccctgagcaccaaagagatgcc
ctgctagaacagcataaaactcacacgctgcagctctacaactccctccgagaaaaagag
tgggacgatcgaatgagcgatgagcagtgcttgatgatcatgtctgtgcgtgtgcgtaag
cgcctcatctccagactcctccccttcctgccggagacacaggctgccactgttgtcatg
ggaatagccaggaaccttccagctctggccaagaaagacaaacaagaccaggtactgtgt
tggttggtagagccagtggcggcagtaatccagtccatgtcgagtacctccctcactgat
ctccttcaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaataagttt
ggcgtgacgctgctctatctgattctgagcgaaggagagaggatgcagagctccgatccc
aactgtcagctcatggatgataaccgctgcagagcacgttttatttcccctgcagccatg
cttgtgtga
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