Puntigrus tetrazona (Sumatra barb): 122349710
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Entry
122349710 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122349710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122349710
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122349710
mRNA degradation factors
5'-3' decay
Decapping complex
122349710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122349710
NCBI-ProteinID:
XP_043101793
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All DBs
Position
1:complement(31384340..31393086)
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AA seq
771 aa
AA seq
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MFHFQGFDDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERVRDVV
HGAGDASSSSSSVDLPPAGSNAHSSALPRPSSSSRLYPGMDERGGGDLAESLTRLILGSD
PAIAGVGTARSDRSRLPPMLSGPPPKPSALAEQSSLLLSYQQQQQLMHRGPAPLPQINSH
SIWENNMGFSPVSSGLVTQKEDKTLMSIIKEVGLPNRPPALSREEGRDLSERVPPPRSCS
PVIGSPPVRAVPIGTPPKQPMSQVHSQQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLS
ITNSPLSHPPFPAGVGPVLSQLQRAQLLNSQVGQFSRGPAPPLLQGSLGGFRPFFGQSGP
RMGPHGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGERKNRDPYSNLM
TQREKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAK
LEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEK
MYSLLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRMSDEQCLMIMS
VRKGKRLISRLLPFLPQTQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSMSS
TSLTDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVF
SVTRELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccatttccagggttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacacttttggtgcaggggccatcgatgat
gattggcaggaggagcatgcccgcctcgcagagcttgacgagcgggtccgagacgttgtg
catggagcgggagacgcctcctcctcctcctcctccgttgacctccctcccgctggcagc
aatgcccactcttcggccctccctcgaccctcctcttcctcccggctttaccctggcatg
gacgaacggggaggcggtgacctggcggagtcgctgactcggctcatcttgggctcggat
cctgctatcgccggagtgggcaccgccaggtcagacagatcccggcttcctccgatgctg
tccggtccgcctcctaagccctcagcattggctgaacagtcttctctgctgctgagctac
caacagcagcagcagctcatgcacagagggccggctcctcttccacagataaactctcac
agtatttgggagaacaatatgggcttcagtcctgttagttctggactagtcactcaaaaa
gaggacaaaacgcttatgtccattatcaaagaggtggggcttcctaatcgtcctcctgca
ctcagcagagaagaagggcgagatttgtcagaaagggttccgcctcctcgctcctgctct
cctgtgattggaagtccacctgtaagggctgtacctatcggaacgcctccgaaacagccc
atgagtcaggttcacagtcagcagaataatcacccttcagccattcacgtgagagcctct
gtgccactgcgctacccccctcccttccccgagcgcctgtcccccaacaacctcctcagc
atcactaattcaccgttgtctcatcctccgttccctgctggtgttggtcctgttctgtct
cagttacagagagcccaacttctcaactctcaggttggtcagttctcacgtggtccagct
cccccattattacagggaagtctcgggggtttcaggccgttcttcgggcagtctggtcct
agaatgggtccccatgggccacctctcggccacgcacccatccgtcacaacaccacccac
ctccacccacagcatcgcagaatgctcaaccagaggatgcagaacagaggcttgggcgat
cacgtcggagggagaggtgttggagaaaggaaaaacagagatccttacagcaatctgatg
acgcaaagagagaaggaatgggtagcgagaatccaaatgatgcagcttcaaagcaccgat
ccatatctggatgactactattaccagaattactatgaaaaaatggagaagcgtcaagag
cgggacagagacaacaggaaggagcacaccaccaaactcatcactcctcaagtggctaaa
ctggagcacacctatcggccagtgcagtttgccggctcgttaggaaagctcaccgtctcc
agtgtgaacaatccaaggaaaatgattgatgccgtggtgacaactcgtagtgatgatgag
gaaaaaagagaaaagcaagtgtggaacaaaagacggcaaatcctttacactgtggagaag
atgtacagtctattattagaagtgcaagactttgagaagaagttcttgcagacccctgag
caccaaagagatgccctgctagaacagcataaaactcacacgctgcagctctacaactcc
ctccgagaaaaagagtgggacgatcgaatgagcgatgagcagtgcttgatgatcatgtct
gtgcgtaaggggaaacgcctcatctccagactcctccccttcctgccgcagacacaggct
gccgctgttgtcatgggaatagccaggaaccttccagctctggccaagaaagacaaacaa
gaccaggtactgtgttggttggtagagccagtgacggcagtaatccagtccatgtcgagt
acctccctcactgatctccttcaggagctgcagggcagtgaaggacagcttccccttgtg
ctgcaaaataagtttggcgtgacgctgctctatctgattctgagcgaaggagagaggatg
cagagctccgatcccaactgtcagctcatggatgataaccgctggactgagttggtgttc
tctgtgacgcgggagctgttgaaagtcccgtcctctgctctttcatcgcctctgtttact
cctccaaacctagtgtccctgttctctcgatacgtggaccgccagagactcgagctcctg
caggagaagctacagatcacagccctgtccaggtag
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