Puntigrus tetrazona (Sumatra barb): 122350275
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Entry
122350275 CDS
T08985
Symbol
col2a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122350275 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122350275 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122350275 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122350275 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
122350275
NCBI-ProteinID:
XP_043102566
LinkDB
All DBs
Position
8:10348914..10367863
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLADSRTLLLLVATHCVLLSLVRCQQEDDQEDFGGCIQDGQHYADRAVWKPEACRVCV
CDSGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGTPGEQGPRGERGPKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPPGPPGKPGSDGEAGKPGKSGMAWTPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGANGENGAPGPMGPRGLPGERGRPGPPGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVV
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVTGPKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGAPGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLLGRTGLRGLPGKDGETGVSGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGSGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGTVGIPGAKGDRGDSGEKGPE
GAPGKDGSRGLTGPIGPPGPSGPNGAKGENGPIGPNGAPGARGAPGDRGEIGXPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPPGPVGSAGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEK
GEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPGGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGSPGDQGSSGPAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGEA
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLTQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCYPEYKSGEYWVDPNLGSPADAISVFCN
METGETCVKPSNPKIPRKNWWSSKSKAQKHIWFGETMNGGFHFSYADSSQTPSTTSIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagcggattcgcggactctcctgctacttgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaagaagactttggcggctgcatccag
gatggccagcactatgcagaccgtgcagtatggaagccagaagcgtgccgtgtctgtgtg
tgtgattcaggggcagtactatgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaaggggcagaaaggagaaccaggtgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggaaccccaggagagcagggaccacgcggagag
agaggacctaagggtgagaagggaaatcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcgggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggccctcctgga
gcacctggcccacaaggtttccaaggcaaccccggagaggctggtgaacccggtcctgct
ggtcctcttggtccccgtggcccacctggaccccctggaaaacccggaagtgatggtgag
gctggcaagcctggtaagtctggcatggcgtggaccccagggcctcagggagcccgtgga
ttccccggaacacctggccttcctggaatcaaaggacacagaggacacccaggtcttgat
ggagctaaaggagaggctggtgctgcaggtgctaagggtgaatctggtgctaatggtgaa
aacggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggccgtcctgga
cctcctggtgctgctggtgctcgtggtaatgatggtctgcctggtcctgctggtcctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacccgagggcgcacaaggaccccgtggagaggccggt
acacctggatcacctggacccgctggtgcatctggtaaccctggtactgatggcattcct
ggtgccaaaggatctgctggtggtcctggcattgctggtgcccctggtttccccggaccc
cgtggcccaccaggacctcagggagctactggacctcttggtcctaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgta
ggacctcagggtgcccctggcccatctggagaagaaggcaagagaggaccaagaggagag
cctggttcagccggacctctcggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtcttgctggagcaaagggcgcccctggtgatcgtggtgttcct
ggtgttaccggccctaaaggtgcaactggagatcctggtcgcacgggcgagtctggtctt
cctggagctagaggtctcactggacgccctggtgatgctggacctcaaggaaaagttgga
gcacctggtgcccctggtgaagatggacgccctggtcctcctgggcctcttggcgctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttcttggacgtactggtcttagaggtttgcctggtaaagatgga
gagactggagtttctggtccacctggtcctgctggtccagctggtgagagaggagagcag
ggtcaacctggtccatctggcttccagggtcttcctggacctactggagcccccggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggctctggccctcagggtctccag
ggaccaagaggacttccaggaactcctggtaccgatggacctaagggtgcaattggacca
gctggtactgctggagctcagggtcctcctggtctgcagggcatgcctggcgagagagga
actgttggaatccctggagctaaaggtgacagaggtgacagcggagagaaaggacctgaa
ggtgctcctggcaaagatggttcaagaggtttaactggtcctattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaaatggtcccattggcccaaatggtgctcctggt
gctcgtggggcccctggcgatcgtggtgagattggtngccccggacctgctggctttgct
ggacctcctggtgctgatggccagcctggaattaaaggagagcagggtgagtcaggacag
aaaggtgaagctggatcccctggacctcaaggaccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaaaggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagtcggatcacctggacccaatggaaaccctggtcct
cctggtcctgtaggttctgctggtaaagatggtcctaagggagttcgtggtgatgctggt
cccccaggcagagcaggagatgctggactgcgtggacctcctggtgctcctggagagaag
ggagaggctggagaggatggtcctcctggtcctgatggtccttccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagcctggcaaacagggaggtcctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggcccacctggtagagatggtgctgctggtgtgaagggc
gagcgtggtaacactggtccaattggtgctcctggagctcctggtgcacctggtgctcct
ggttccgttggtccaattggcaaacaaggagacagaggagagaatggcccacaaggacct
ggaggaccccctggacccgctggagctagaggcatggttggacctcaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacaccgaggattcact
ggtctgcagggtctgcctggacctcccggttctcctggagaccagggttcttctggacct
gctggaccaagtggcgctaaaggacctgccggacctgttggaccagctggtaaggacgga
tctaatggtcagcctggacctattggaccacctggacctcgtggacgttctggagaggct
ggcccaagtggtccacctggtaaccctggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgcctttgctgggttgtctcagcctgagaagggacccgatcctctg
cgttacatgcgtgccgatgaggcctccagctctcttacacaacatgatgtagaggtcgat
gccacactgaagtcgatcaacagccagatcgaggacatccgcagcccagatggctcccgc
aagaaccctgcacgctcctgccgagacctgaaactctgctaccctgaatataagagcggt
gagtattgggtggatcctaaccttggtagccctgctgatgccatcagtgttttctgcaac
atggagaccggagagacctgcgtgaagcccagcaatcccaaaatcccacgcaagaactgg
tggagcagcaagagcaaggcgcagaagcacatttggtttggagagaccatgaacggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccagcatccagctgaac
ttcctcagactgctgtctactgaggccactcagaccatcacgtaccactgcaagaacagc
gttgcttacatggaccaagccacaggcaatctgaagaaggccgttctgctgcagggctct
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctcccatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
