Puntigrus tetrazona (Sumatra barb): 122350358
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Entry
122350358 CDS
T08985
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a
KO
K08533
RAR-related orphan receptor beta
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122350358 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ptet03310
]
122350358 (rorca)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122350358 (rorca)
Nuclear receptors [BR:
ptet03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122350358 (rorca)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF3452
Motif
Other DBs
NCBI-GeneID:
122350358
NCBI-ProteinID:
XP_043102692
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Position
8:complement(9353668..9366787)
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AA seq
479 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAIYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQERAGALGNGVPGHAGD
EVGENGSNHGRAYSRGSSTTLSDLDDITTLPDGLLFDLPLTPEEAADYCSLELLGGSGGS
SSSSQSSPETNRQEFSDTTHIKHEYQTLHETGIYTRSFLNPPEGCSLMEIERITQNVVKS
HIETSQYSTEELKRFAWTLYTPEEIRVYQNKSTEIMWQQCAVYITNAIQYVVEFAKRITG
FMDLCQNDQIILLKAGCLDVLLIRMCRAYNPINNTLLFDGKFASPQLFKALGCDDLVGAV
FEMAKTVSRLQLSEEEMALFTATVLLSPDRPWLTDAQKVQKLQEKVYVALQHCLHKSGAP
EEKLAKMVSKLPMMKSICNLHIDKLEFFRLLHPETAYNFPALYREVFCSEISFPDSTEG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagagcacaaatcgaagtaatcccatgcaagatttgcggggacaaatcatcaggcatc
cactatggggtgatcacttgtgaaggctgcaagggcttcttccgccgaagtcagcaaaac
aatgcgatatactcctgctccaggcagaggaactgccttattgaccgaacaaatcgcaac
cgctgccagcactgccgcctgcagaagtgtctggcattgggcatgagccgcgatgcggtg
aagtttggacgtatgtcaaaaaagcagcgcgacagcctctatgccgaggttcagaagcac
cagcagtctcaggagcgggcaggggctttaggcaatggtgtacccggtcatgctggtgat
gaggtcggggagaacggcagcaaccatggccgagcctacagtcggggctccagcaccaca
cttagtgacctggatgatataaccacgctaccagatggtcttctttttgatctgccgctc
actccggaggaagctgctgactactgcagcctggagttgctgggaggaagcggtgggagc
agttcgtcctcgcagagttctcctgagacaaacagacaggagtttagtgacacaacacac
atcaaacacgagtatcagaccctgcacgagacgggaatttacactcgctcatttcttaac
ccacctgaaggctgttccttgatggaaattgaacggattacacagaatgtggtaaaatcc
cacattgagacaagtcagtacagcacagaagaactgaaaagatttgcttggacactctac
acacctgaggagatacgtgtctaccaaaacaagtccacagagattatgtggcagcagtgt
gctgtgtacatcacgaatgccatccagtatgtggtggagtttgccaagcgcatcactgga
ttcatggatttgtgtcaaaatgaccagattattcttctcaaagcaggctgcctggacgtg
ctgttgatccgaatgtgtcgggcctacaaccccatcaacaacacactattgtttgatgga
aagtttgcaagccctcagctctttaaagctctcggttgtgatgatttggtgggtgctgtg
tttgagatggctaaaaccgtgagtcgactacagctgtctgaagaagagatggctctcttt
actgccactgtgcttctgtctccagaccgtccttggttaacagatgctcagaaagtgcag
aaacttcaggagaaggtctatgttgcgttgcaacactgtcttcataaaagtggtgctcct
gaggaaaaactggcaaagatggtgtccaagttgcctatgatgaagtccatttgcaacctc
catattgataagctggagtttttccgtctgcttcacccagaaacggcctacaacttccct
gctctttacagagaggttttctgcagcgagatctccttcccagactccactgagggctaa
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