Puntigrus tetrazona (Sumatra barb): 122350446
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Entry
122350446 CDS
T08985
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122350446 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122350446 (fip1l1b)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122350446 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
122350446
NCBI-ProteinID:
XP_043102853
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Position
1:8660735..8668619
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AA seq
558 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAIGATSAPPVTEEVTAT
TNNTTTTITTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYAAYGGT
PVNLNIKSAGSRAYGAGTKVKGIDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYF
NYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITVAAHAAKADF
SSPSNLYKAGLNPARISPPQWAGPASQEMSYYTKTPGTIDVIGGQTATISRVEGRRRHNL
EGNNIQVISEHPSSEAEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRMPIT
VPPPNFPPPTGGPPPSLIPTMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVNPWPGLM
DNPKQWEYYPRRDKEREKERERDRPRERGHERDHSPSAVAYNSDEERYRSYRDYGDRAYE
RHRERASREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEG
KEPSEERSADQENQEAME
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccaccgatgctagtgcaggagacgaggag
gaggaatggctgtacggggacgagggtgaaagtaaagaaaccgaagaagaggaggccaaa
ctgacggcagccattggtgcgacctctgctcctcctgttacagaggaggtcaccgcgacc
acaaacaacacgactaccaccatcaccaccactactggaaatggtgtggccagtcaggag
gaagcacctggagaagatgaagacagtgagagcgatagtgatgacgatgatgatgatgtc
cgcgtcaccattggcgatataaaaacaggagcgccacagtatgcggcatatgggggaact
ccagtgaatctaaacataaagtcagctggcagcagagcatatggagcaggtaccaaagtg
aagggcatagacctcgaagctccaggcagcatcaatggagttccagtcctggaagtggac
atggagtcctttgaggagaaaccatggaggaagccaggtgcggacttgtctgactatttt
aactatggttttaatgaggacacgtggaaagcgtattgtgaaaagcagaaaaggctacgc
atgggccttgacattctcaacattggatccactaccagcaagatctcagttcagcagggt
cgcacaggtaacagtgagaaggagatcacagttgcagctcatgcagctaaagcagacttt
tcctctccatctaacctgtataaagcaggtctgaacccagcgaggatatcccctccacag
tgggcagggcctgcctctcaagaaatgtcctattatacgaagacgcctgggaccatagac
gtgattggcggacaaactgccaccataagcagggtggaaggacgacgtcgccacaatctg
gaggggaataacatccaggtgatctcggaacatcccagctctgaggctgagcctgccaag
atgccacctcccttctttcccccgggaccacttcctccgaacatcccgcctcctccattc
ctccctcctcctgtcagtcaggctccacctctgattccacctccacggatgcctatcact
gttcctccacccaattttccccctcccactggaggacctcctccttcacttatcccaact
atggacaacagtgggcacccaggaggatatgacggacgtcctgttgctccataccctttt
cctacaggtgggtttcctccacccatgcaaggagctgttaacccgtggcctggtttgatg
gacaacccgaaacagtgggaatactaccctcgacgagacaaagagagggaaaaagagcga
gagagagacaggccgagggaaaggggccatgagagagaccatagtccctccgctgtggct
tataacagcgatgaggaacgctatcgctcttaccgcgactacggagaccgagcgtatgag
aggcaccgagagcgagcgagccgtgagaaggaggagcgtcatagagagaggagacacaga
gagaaagaggaaggcaggcacaagtcatcacggagcagtagcagacggagacatgacagc
gaggagggtgacagtcaccggcgccacaagcacaagaagtccaagaggagcaaagagggg
aaggagcccagcgaggagcgttctgctgaccaggagaaccaggaggccatggagtaa
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