Puntigrus tetrazona (Sumatra barb): 122350501
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Entry
122350501 CDS
T08985
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122350501 (pcdh18a)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122350501 (pcdh18a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Syndecan
PepSY
SIT
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
122350501
NCBI-ProteinID:
XP_043102968
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Position
1:complement(8172337..8179576)
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AA seq
1134 aa
AA seq
DB search
MDTSKGTVVCVTLLKLAVLVTLARYVSAKTLKYQVYEEQKVGTVIARLREDVADVLSKLP
SSIPLRFRAMQRGSASLLSVRDQDGEISIRTKIDREKLCEKNLNCTIEFDVLTLPTEHLQ
LFHIEVEILDINDNAPQFARPVIPIEISETAAVGTRIPLDSATDPDVGENSLNTYSLTPS
DFFMIDILTRTDGAKYAELVVLKELDREVRASYELQLTASDRGVPPKFGTTLLKISIADS
NDNNPVFEKPSYVINLLENSPLGSLLIDLNATDPDEGTNGKIVYSFSSHVSPKILETFKI
NSDNGHLTLMRKVDFESTNSYDIDVQAQDMGPNSMPAHCKVIIKVVDVNDNKPDISINLM
STGNEEIAYISETAPVDTFVALVRVDDLDSGLNGEVECRLHGQGHFRLQKTYEKNYMILT
NVSLDREKRSEYSLSVIAEDKGSPSLSTIKHVTVQVQDENDNAPKFEKSRYEISKAENNS
PGAYLSSVRASDPDLGPNGQVSYSILESTVHGSSISTYVTIDPSNGDIYALRTFDREDVS
QISFLVQARDSGSLPLRSNVTVVLTVLDENDNRPVIMMPQLWNHTADVPVSKYAEIGDVV
TVVRAIDRDAGVNGDLSCSVVGGNEAVYFAMDAKTCEIRTNVSMQDIPQDHVELTVLVQD
HGAQPLSARALLRLSLYENIENHMNPHLTGGGTRDGPLDVSMIIIISLGAICAILLLIMV
AFALRCSREKKDTRSYNCRVAESTYQQHPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSP
TSSPGPERAHMGSRQSQHSRQSLNSLVTISSNHIPENFALEMTHATPPVEQVSQLLSILH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSDAGDSDCEMGRDSPIDRLLGD
GFGDLFHSDGHHRLHPVMKLCTEECRVLGHSDQCWMPSQASSDYRANMYIPGEESRPQVL
EEDQQSVDSAKKSFSTFGKDNEEECGGSLLSEMNNVFQRLLPTSYAEVNELEGCAGPPTS
SVGLEIRKGFLPGKASSTSPAYPQGVAVWAANTHFQNPGNAVTSGHSSTNHAASQAHLKW
LPAMEEIPENYEEDDLESVLSQRQGKRNDTRHEVVDASELVAEINKLLQDVRQS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggataccagcaagggcacggtggtctgtgtcactttactcaaacttgctgttctcgtg
acattggcacggtacgtctcggctaaaactctgaaataccaagtttacgaagagcagaag
gtgggtacagtaatcgccagacttcgagaagatgtcgctgatgttttgtccaaacttcca
agttcgattccgttacgctttagagccatgcagcgcggcagcgcgtctcttctctccgtg
cgagaccaggatggagaaatcagcatcaggaccaaaattgaccgcgagaaactgtgcgaa
aagaatctcaactgcactatcgaatttgatgtcctcaccctccccacggagcacctacag
ctgttccacatcgaggtagaaattttggacattaatgacaatgcgccacagttcgcgcgc
ccagtcattcccatagagatctccgaaactgccgctgtggggacgcgcattccccttgac
agcgccaccgatccagacgtcggagagaactcgctgaacacatactctctgaccccatct
gacttctttatgattgatattctaaccagaaccgatggcgccaagtacgcggagctcgtt
gtgcttaaagagctggatagagaggtgagagcgagctatgaactccagctaaccgcttca
gacaggggcgttcccccaaaatttggaacaacgctcttgaaaatcagcatagctgactca
aacgacaacaacccggtatttgaaaagccatcttatgtgatcaacttgcttgaaaattcc
cctttaggcagtttgcttattgatctgaatgccactgacccagatgaagggacaaacggt
aaaattgtatattcttttagcagtcacgtgtcacctaaaattctagagacgtttaagatt
aattctgataatggacatttgacactaatgaggaaagttgactttgaaagcacaaattcg
tatgacatagatgttcaagctcaagacatgggccccaactcaatgccagcacactgtaaa
gtcataataaaagtggtggatgtgaatgataacaaacctgacatcagcatcaatttgatg
tccactgggaatgaggagatagcttatatatcagagacagctcctgtagatacgtttgtg
gctctggtgagggtagatgacctggactctgggttgaatggagaggtggagtgccgcctc
catggccagggtcatttcaggctacaaaagacatatgagaagaactacatgatccttacc
aatgtcagtctggaccgagagaagaggtcagagtacagcttgagcgttatagctgaagac
aaaggctctccaagtctatcaaccatcaaacacgtcactgtgcaggtccaggatgagaat
gacaatgcaccaaagtttgagaagagcaggtatgagatttctaaggcagagaataactca
ccaggagcttatctgtcatctgtgagggcctcagatccagacctgggtccaaatggtcaa
gtgagctactctatacttgaaagtacagtccatgggagctccatctccacatatgtaact
attgacccctctaatggagacatttatgcgctacgtacgtttgatcgtgaagatgtgagt
cagatctcattcctggtccaggcccgagattctggaagtcttcctcttcgtagtaatgtg
accgttgtgttgaccgtcttggatgagaatgacaacagaccagtcatcatgatgcctcag
ctgtggaaccacacagctgatgttccagtatccaaatacgcagagattggtgacgttgta
actgtagtccgcgcgatagaccgtgatgctggcgtcaacggtgacctgtcatgttctgta
gtagggggtaatgaggcagtttacttcgccatggatgctaaaacatgtgaaattcgaacc
aacgtcagcatgcaggacatcccacaagatcacgtggagctgaccgtactcgtgcaggac
catggtgctcaacccctcagcgccagagccctgctgagactttcgctttatgaaaacatt
gagaaccacatgaatccccatctgacaggtggaggaaccagagatggtcctctagacgtg
tccatgatcatcatcatctcccttggggcgatttgcgccattttgcttctcatcatggtg
gccttcgcccttcgctgctcacgtgaaaagaaggacactcgctcatacaactgcagagtg
gctgagtctacttatcaacagcatccaaaaaagccttcacggcagatccataaaggcgac
atcactctggtacccaccgtcaacgggacccttccaatccgtgcacaccatcgctcacca
acctcctcgcctggacctgaacgggcccacatgggcagccggcagagccaacacagccgc
caatcactgaacagcttggtcactatttcctccaatcacatccctgagaacttcgccctg
gaaatgacacatgccacgccccctgtggagcaagtctcacagctcctctcaatactccat
cagggtcagtatcagccgaggcccagcttcagagggaacaaatactctcgcagctacagg
tacgccctccaggacatggataagttcagtctgaaagatagtgggcgtggcgacagtgat
gcgggcgacagcgactgtgagatgggccgtgattcgcccatcgaccggttgctaggcgac
ggcttcggagacctcttccacagcgacggacaccaccgtctccacccagtcatgaaattg
tgtacggaggagtgccgtgtgttgggtcactctgaccagtgctggatgccatctcaggcg
tcttcggattatcgtgcaaacatgtacatcccaggagaagagagcaggcctcaggtcctc
gaggaggaccagcagtcagtcgactcagctaagaagagcttttctaccttcggaaaggac
aacgaggaggaatgcggcggttcgctgctgtcagaaatgaacaacgtcttccaacgtctc
cttccaacttcttacgctgaggtcaatgagctcgaaggatgcgctggccctccaacttcc
tccgtcggcttggagatcagaaagggcttcctgccgggtaaggcgtcatctacaagcccc
gcctacccgcagggcgttgccgtatgggcggccaatactcactttcaaaatcccggcaat
gccgtgacgagtggacacagctcgaccaatcacgcggcatcacaggcgcatttaaaatgg
ctgccggcaatggaggagatcccagagaactatgaagaggatgacttagagagcgtgctc
agccagcggcagggaaaacgcaacgacacgagacacgaagttgtcgacgctagcgaactg
gttgccgaaattaacaaattgcttcaggacgtacgccagagctaa
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