Puntigrus tetrazona (Sumatra barb): 122350545
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Entry
122350545 CDS
T08985
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03082
ATP-dependent chromatin remodeling
ptet03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122350545 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122350545 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ptet01009
]
122350545 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122350545 (smarcb1a)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122350545 (smarcb1a)
Protein phosphatases and associated proteins [BR:
ptet01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122350545 (smarcb1a)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122350545 (smarcb1a)
SWI/SNF complex
122350545 (smarcb1a)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122350545 (smarcb1a)
PBAF complex
122350545 (smarcb1a)
SWI/SNF complex
122350545 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
122350545
NCBI-ProteinID:
XP_043103058
LinkDB
All DBs
Position
8:complement(14664819..14670406)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTYGQKPIKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEIFEGHDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENATQPEILVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIESYPTDS
ILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacatacggacagaaacctattaaattccaactggaggaggatgga
gaattttacatgattggatcagaggtggggaattacttgcgtatgttcagaggctcctta
tataagcgctacccatcgctctcaagaagactagcgacggtggaagagaggaagaagata
gtagcatcatctcacgatcacggttacaccactttagccaccagtgtgacgctgctgaaa
gcctccgaagtcgaggagatatttgaggggcatgatgagaagtacaaggccgtgtccatc
agcactgaacctccagcctatctcagggagcagaaagccaagagaaacagccagtgggtg
cccactcttcccaacagttcacatcacttggacgctgtgccttgctccaccaccattaac
cgcaatcgaatgggacgtgacaaaaaaaggaccttcccgctctgctttgacgatcatgac
cctgctgttatccacgagaacgcgactcagcctgagatcctggtgcccatccggctggac
atggagattgacggacagaagctgcgtgatgctttcacgtggaacatgaatgagaagctg
atgactccggagatgtttgctgaaatcctctgcgacgatctggatctgagcccactgacc
tttgttccagccatcgcctcggccatcagacagcagatagagtcttaccccacagacagc
atactggatgagcagatggaccagagagtcatcatcaagttaaacatccatgttgggaac
atatctctggtagaccagtttgaatgggacatgtctgagaaggagaactctcctgagaag
tttgctctgaagctgtgctctgaactgggcttgggaggagagtttgtcaccactatcgca
tacagcatacgcggccagctcagctggcatcagaggacctacgccttcagtgagaaccct
cttcccacggtggagattgccatccggaacacaggtgatgctgaccagtggtgtccactg
ctggagacactgacagatgctgagatggagaagaagatcagggaccaggacagaaacaca
aggcgaatgagacgacttgcaaacacagccccagcatggtga
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integrated database retrieval system
