Puntigrus tetrazona (Sumatra barb): 122351264
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Entry
122351264 CDS
T08985
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122351264 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122351264 (ddx3xa)
03041 Spliceosome [BR:
ptet03041
]
122351264 (ddx3xa)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122351264 (ddx3xa)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122351264 (ddx3xa)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122351264 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
122351264 (ddx3xa)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122351264 (ddx3xa)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122351264 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
122351264
NCBI-ProteinID:
XP_043104145
LinkDB
All DBs
Position
9:16185527..16197489
Genome browser
AA seq
813 aa
AA seq
DB search
MSHVVVDGSHGLDQQLAVLDLNSADGQGAGTGRRYIPPHLRNKDASKNAGNAYSSGRQSG
YSVAPVQSFSPKQYPQSWQPEGNQRHRPNYPTGWNDFRTGSQRYPSQELSFYHTYTSGWP
DRCASPARTDSSVATDGNEDAASVISWADRCDSPGWDGGRSNGFVNGYHDGRMNGTANFG
RGPPRNDRGGRGGFRGNRNGGSFNQPMHNAGYGSYENKDGGWNSVVNRDAYTSFGGRSDR
GKSAFFNDRGAGSRGSRYERGGFGGGTGGNSRWVEESRDEEDWSKPMPPNERLEHELFSG
SNTGINFEKYDDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPI
IKAKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQATKASTQQENGKYVRRKQYPI
SLVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV
DMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGARQTMMFSATFPKE
IQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFV
ETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDIS
NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVP
SWLENLAYEHQHKSTNRGRPKRFSGGFGARDYRQMAGGGNAFGNRGARNTGGHGGNRGFG
GNKGGFGSFGGDSYGGNYGNYGGNYAQVDWWGN
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacggttcacacggtctagaccagcagcttgctgtcttagac
ttgaactcagctgatggacagggtgctggcactggtcggcgttacattcctcctcatttg
agaaacaaagatgcatcaaaaaatgcaggaaatgcttattcctctggtagacagagcggt
tattcagtggcaccagtacagagcttttcccccaaacagtatcctcagagttggcagcct
gagggaaaccaaagacacaggcctaactatccaactggatggaatgactttaggactggt
tcccagaggtatccgtcccaggagctctcattttatcacacctacactagtggctggcca
gacagatgtgcttctcctgcgcgtaccgacagcagtgtagccaccgacggaaatgaggac
gcagccagtgttatcagctgggctgatcgctgtgattcccctggatgggatggcggtcgt
agcaatggttttgtcaatggctaccacgatgggcgtatgaatgggactgcaaactttggc
cgtggacctcctcgcaatgacagaggtggacgtggtggctttcgtggaaataggaacggt
ggttccttcaaccagccaatgcataatgcaggttatggcagttatgagaacaaggatgga
ggctggaactctgtagtgaaccgagatgcctacactagctttggtgggcgttctgataga
gggaagtctgccttcttcaatgatagaggagctggctcaagaggaagcaggtatgaacgt
ggaggctttggtggaggaacaggaggcaacagtcgctgggttgaagaatccagagatgaa
gaggactggtcaaagcctatgccccccaacgagcgtctggaacatgagctgttctctggg
agcaacacggggattaactttgagaagtatgatgacattcctgtggaggccactggaaca
aacagtcctgggcacattgagagtttccatgatgtggacatgggtgagatcattatgggc
aacatcactctaagccgctacacacggcctactcctgttcaaaagtatgcaatccccatc
atcaaggccaagagggacctgatggcctgtgctcaaacaggctcggggaagactgcagcc
ttcctgcttcctgtgcttagtcagatctacactgatggaccaggagaggcactgcaggcc
accaaagcgagcacccagcaggagaatgggaagtacgtccgtcgtaagcagtatcccatc
tctctggttctggctccaaccagagaacttgctcttcaaatttatgatgaggccagaaag
ttctcataccgctctagagtgcgcccgtgtgtggtatacggaggcgcagatatagggcaa
cagatccgtgatttggaaagaggctgtcacttactagtggccacaccaggtcgtctggta
gacatgatggagcggggcaagattggccttgactactgcaaatacctggtgttggacgag
gcagacagaatgctcgatatgggttttgaaccccagatcagacgtattgtggagcaggac
accatgcctcctaaaggtgctcgtcagaccatgatgtttagtgccaccttcccaaaagag
atccagattctggcccgtgactttctggaggagtacatcttcctggctgtaggccgtgtg
ggctccacctcagagaatatcacccagaaggtggtttgggtggaagagaatgacaagcgc
tccttcctccttgaccttctcaatgcaacaggcaaggattctctcacactggtgtttgtg
gagactaagaagggtgctgatgctcttgaggacttcctctatcgtgagggctatgcctgc
accagtatccatggtgacaggtctcagcgcgaccgtgaggaagcgctccaccagttccgt
tctgggcgctgccctatcatggttgccactgctgtggctgcacgtggccttgacatctcc
aatgtgaaacatgtcatcaattttgacttgcccagtgacattgaggaatatgttcatcgt
attggtcgtacaggccgtgtaggaaaccttggactggccacgtccttctataatgataag
aacagcaacatcactaaagatctgctggacatattggtggaggccaaacaggaggtacct
tcctggcttgagaacctagcctacgagcaccagcacaagagcaccaaccgcggacgacct
aagagattctctggtggctttggagccagggattaccgacagatggctgggggcggcaat
gctttcggcaaccgtggtgctcgcaacactggtggccatggaggcaacagaggttttgga
ggcaataagggaggttttgggagcttcggtggtgacagctacgggggcaactatggaaac
tatggaggaaactacgcccaggtggactggtggggcaactaa
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