Puntigrus tetrazona (Sumatra barb): 122351316
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Entry
122351316 CDS
T08985
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122351316 (upf3a)
03015 mRNA surveillance pathway
122351316 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122351316 (upf3a)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122351316 (upf3a)
mRNA cycle factors
P-body specific factors
122351316 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_1
Motif
Other DBs
NCBI-GeneID:
122351316
NCBI-ProteinID:
XP_043104218
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All DBs
Position
9:complement(17151898..17161537)
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AA seq
481 aa
AA seq
DB search
MRSEKEQRTGSRERGSVEIQFRECQREQENVAVNPKHKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDVDSDRLKDKGDSGEMEKNRWEKPAGHTKSK
DSKDNRSQIESDKEQRESHGRRQRDKEHRGRDEECKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKDQHHGYSYCPETGDKLGKEDREDMGSRKERIRNKSVLVHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRMGSGNKTFDFPPISPEHGGEHCYKTVIGTGSEKSVD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagaggacaggaagcagggagagaggcagcgtggagatccag
ttcagggagtgtcagagggagcaggaaaacgtcgcggtgaaccccaagcacaaggaggag
aaaaaggagatcttcacgaaggttgtcatacgcagactgccacccagtttatcaaaagac
cagcttgaagagcatctgagtcctcttccatcttttgactactttgagttcttccccgct
gatcagagcttatacccgcatctcttctcaagagcatacatcaactttaaaaacccagag
gatatcattattttcagagatcggtttgacggctatgtattcattgacaataaaggccaa
gagtatccagctgttgtagaatttgctccatttcagaaggtttccaagaaaaagttgaag
aagaaagatgctaaagcaggaacaattgaagaagacccagaatataggcgatttctggaa
aattactcttgtgatgaggagaaatcaatggcaaatccagaaacactcctgggagagatt
gaagctaaaaccagagaactcatagcgaaaaggacaacgcctttgctggaatacatcaaa
aacaagaaattagagaaacagagaataagagaggaaaaaagagaggagaggcgaaggagg
gaactggaaaagaagcgacagagggaggaggagaagaggaagcgcagagaagaggagaga
cgaaagcgaaaggaggctgaaaagcagaagaagctctctgaaaaggagatcaagatcaag
cttttgaagaaatgtgatcgtgatgatgacgtggactcagacagactgaaagataaagga
gacagtggagagatggagaagaacagatgggaaaagccagcaggacacactaagtcaaag
gattccaaggataataggagtcaaatcgagagtgacaaggagcagcgggaaagtcacggc
cgtcgacaaagggacaaagagcatcgcggcagagacgaggaatgcaagcgacagaggcat
cactacgagtttgacaaatttatgcgacgcaaagaggagaccaaatggggtaaaggctac
tgccaggacagagccaagaaagaccaacatcatggatattcttactgcccagagaccgga
gacaaactgggcaaggaggatcgagaggacatgggcagcaggaaagaacggattcgcaat
aagtctgtgttagtgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgaccggcaatgcagctgtaccaacctggtgctaga
aaccgaaagcggatgggctccgggaacaagacgtttgacttcccaccgatctctcccgaa
cacggaggggaacactgctacaagacggtcattggcacaggctcagagaagagtgtcgac
gagtga
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