Puntigrus tetrazona (Sumatra barb): 122351899
Help
Entry
122351899 CDS
T08985
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122351899 (col18a1a)
00535 Proteoglycans [BR:
ptet00535
]
122351899 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122351899 (col18a1a)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122351899 (col18a1a)
Proteoglycans [BR:
ptet00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122351899 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122351899 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
122351899
NCBI-ProteinID:
XP_043105230
LinkDB
All DBs
Position
9:20040872..20106279
Genome browser
AA seq
1651 aa
AA seq
DB search
MDGLQHISDPTDSRFNESINFSHKNVSTYNGRNSTEHDDYDNTTLYSSEYSVSDSLLTNE
SEFLVASFSTAVETPRCLPVYSDLPFCTRMGVESFTVPNFLNQSSVEDVRVVLTEWAWLL
RSNCHYSLEWFFCLLLTPRCGPPGLPPPLPCRSFCEVLRDSCWTLLDEGRLPVECQSLPE
EKHDGYRCLSVSNQKEESGVSLLQLIGDPPPEGVSKVFDDANNPGYVFDQSSNVGQSAAG
HLPKTFFRDFSLIFNIKPTSSKPGVIFSITDPTQNIMYVGVKLSAVEKGKQSIIFYYTEP
DSQSSYEAARFSVPSMLNTWTRFSISVLNEHVSLYFNCDSDPQVENFERSPDDMDLDAGA
GVFVGHASGADSDKFLGVIGDIRVLKDPRAAERHCEEDEDDFDANLQGSGDYGASGDGEG
PPSVQPTPPSSRPIQQPPVTSRLHEKQQTGSVDSSRQTSGSYGDSRQTSGSYGGSRKTSG
SYGDSRKTSASSGDSRQASGSYGDSEQTSGSYGDSQTISGSYGGSRQSSGSNEGSRQTGH
YGDSRQNLDSVGVSRQTSGSYDDSRRASNSLSTSGSTGNGIRYSLESRLGPAGSTGAKGD
RGDRGEKGAKGERGLTGPKGDAGSESVSGSSAKGAKGDAGEKGMKGNSGFGYPGSKGDPG
PPGPPGPPGPPGPSAEVEVRGDGSVVQRVAGPRGPPGPPGPSGPAGAEGEPGDPGEDGKA
GQVGPPGFPGTPGSPGLKGDKGERGESQPGPRGPPGPPGPPGPPSHSDRPTFVDMEGSGF
DLDSVRAMPGLPGLPGPPGPPGPPGLPGTGSSGSGGFGPPGPPGQNGAPGQPGLPGPSGA
DGKPGLPGSKGERGDAGELGLPGPVGEKGAKGSSGAAGLPGEGGLAGLPGPMGPVGPPGP
PGPPGPSYHVGFDDMEGSGVHFSSVPGVRGPIGIQGPPGAPGPQGKPGLQGFPGEKGSEG
AQGKDGQPGLDGFPGPQGPRGDKGDRGDRGEPGRDGSGLPGPPGPPGQPGQIIYRYSENY
DETGRPGPQGGGGLPGQAGFPGPVGPKGDRGEPGSPGYGIKGEKGEPGVILGPDGNPLFL
GGLTGQKGERGLAGPVGPSGPAGPSGLKGEFGMPGRPGRPGVNGYKGEKGEPGSGSEYGY
QGPPGPPGPPGPPGPAVPLDRFGRYEDYSRHYPATKGEKGDQGAPGVPGFSSNFDIYALK
NEMKGERGESGVKGEKGEPGGGFYDPRFGAVQGPPGNPGPTGPKGDSIRGPPGPQGPPGQ
PGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPPLSIPGPPGPPGPPGIPGTGSGVTFLRS
YDIMIATARSQNEGALIYILDRNDLYLKVRNGVRQVMLGDYKPLYGELDNEVAAVQPPPV
VHYSQDHTANNGAEQISPPLPPIEFPRREPENRNPSPPDSRYPDPRYPPYTDNRYTDPVQ
PHRYPVQPERNPITPARRPSPPVGQPEGHVHTSGPGLHLIALNSPQVGNMRGIRGADFLC
FQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFRSWESLFSDSESR
MKDSAPIYSFDGRDVLRDSAWPEKMIWHGSNGRGHRQTDNYCETWRAGDRAVTGLASSLQ
AGQLLQQTSSSCSSSYIVLCIENSYMTQSKK
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggatggacttcagcacatcagcgacccaacagacagtcgatttaatgaaagcatcaat
ttttctcataaaaatgttagcacttataatgggcgtaattctacagagcatgatgattat
gataacacgacattgtattcctcagaatactctgtctcagatagtctactaacaaatgaa
agcgagtttttagtagctagcttttcaacagccgtcgaaaccccgcgctgcttgccagtc
tattctgatttgccattttgcaccagaatgggagtggagagtttcacagtaccaaatttt
ctaaatcaaagcagcgtggaggacgttcgggtggttttgaccgaatgggcatggctgttg
cggtcaaactgccattatagcttggaatggtttttctgcctgctgttgacacctcggtgc
ggcccacctggactgccgcccccgttgccctgtcgcagtttctgcgaggtcctgcgtgac
agttgctggacgctcctggatgagggccgcctccccgtggagtgccagtctctgcccgaa
gagaagcatgatgggtatcggtgcttgtcagttagtaaccagaaagaagaaagcggagtg
tcgctgttgcagttaattggtgatcctccacctgaaggcgtctccaaagtcttcgacgat
gctaacaaccccggctatgtgtttgaccaaagctccaatgtgggtcagtcagcggcgggc
cacctgcccaaaactttcttccgtgacttctccctcatcttcaacataaaacccacatcc
tccaagcccggagtcatcttctccatcactgacccaactcagaacatcatgtatgttggt
gtgaagctgtcagcggtggagaagggcaagcagtccatcatcttctactacaccgagcct
gactctcagagctcatatgaggcagccagattctccgtgccctccatgctgaacacctgg
actcggttttccattagtgttttgaacgaacacgtttccctctacttcaactgtgactca
gatcctcaggtcgagaattttgagcggtctccagatgatatggacctggatgcaggggcg
ggagtgtttgtcggtcatgccagtggagcagactcagataagtttttgggtgttatcggc
gatatcagggtgttgaaagaccctagggcagctgaacggcactgtgaagaagatgaggat
gactttgatgcgaatctccagggttcaggtgattacggagcaagtggagatggagaggga
ccgccatcagttcagccgacccctccctcgtctcggccgatccagcagccgccggtgacc
agcagactgcatgagaagcagcagacaggctcagtcgattcttctcggcaaacgtctggc
tcctatggtgattctcgacaaacatctggctcatatggaggctctcgaaaaacatctggt
tcatatggggattcccgaaaaacatctgcctcctccggtgattctcggcaagcatctggc
tcatacggcgattctgaacaaacttctggttcatacggtgattcccaaacaatctctgga
tcgtatggtggttctcgacaatcatcgggctcaaatgaaggttcccgacaaactggccat
tatggtgactctcgacaaaatcttgactcagttggtgttagcaggcaaacttcagggtcg
tatgatgattctagacgagcttcaaactctctaagtacgtcaggctcaactggcaatggc
atacggtattctctggagtccagactcggtcctgcaggttcaacaggtgcaaaaggagac
agaggggacagaggagagaagggtgccaaaggtgaaagaggtcttacggggccgaagggt
gatgcaggatctgaatctgtgtctggtagtagtgcgaaaggagcaaagggtgacgcagga
gagaaaggaatgaagggcaattctggttttggttatcctggatcaaagggtgaccctggc
cctccggggcctccagggcctcccggtcccccagggcccagtgcagaagtagaagtgagg
ggagatgggtcagtcgtgcagagggtggcaggaccaagaggaccacccggaccaccagga
ccatctggccctgctggagctgaaggggaaccgggtgaccctggtgaagatggaaaagct
ggtcaagttggacctcctggttttcctggaactcctgggagtcctggacttaaaggagat
aaaggagaacgaggtgaaagtcagccaggacctcgtggacctccagggcctcctggccca
ccgggacccccatctcactctgataggcctacatttgtggacatggagggctctggattt
gatttggacagtgtacgggcaatgcctggtttgcctggccttcctggtcctcctggtccc
cccggccctcctggtctccctggcactgggtcttcaggctctggtggttttggacctcct
ggtcctcctggacaaaacggagctccaggtcaaccgggacttccaggtccatcaggtgct
gatggaaaaccaggcttacctggctcaaaaggagaaaggggtgatgccggtgagctgggc
ctacctggacctgtgggagagaagggtgccaaaggttcatctggtgccgctggccttcct
ggagagggtggacttgctggtcttccaggaccaatgggacctgttggacctccaggaccc
cctggtcctcctggcccaagctatcatgttggttttgatgatatggagggctctggcgtt
cacttcagttcagtccctggagtaagaggaccgataggaatccagggacctcctggtgcc
ccaggaccacaaggtaaacctggcttacaaggatttcctggtgagaaaggcagtgaggga
gctcagggaaaagatggccagcctggtttggacggcttccctggaccacagggaccaagg
ggcgacaagggagaccgaggtgataggggtgaacctggtcgagatggaagtggactccca
ggtccacccggcccccccggacaacctggacaaattatttatcgttattctgaaaattat
gatgaaactggaagaccaggtcctcagggagggggtggtcttcctggtcaagcaggcttt
ccaggcccagtgggaccaaagggtgacagaggagaacctggctcaccaggctatggcatt
aagggtgagaaaggagaacccggagtaattcttggacctgatggaaacccactcttcctt
ggtggactgacaggccaaaagggtgagagagggcttgctggaccagtcggaccttctggt
ccagctggaccttctggtttgaaaggtgaatttggaatgccaggcagacccggccgtcca
ggtgtgaacggatacaaaggagagaagggagaaccagggtcaggctctgaatatggctac
caaggtcctcctggtcccccaggaccccctggtccccctggacctgctgtgcccttggac
agatttggtagatatgaagattattcgaggcactatccagctacgaaaggagagaaagga
gaccagggagctcctggtgttccaggtttttcctctaactttgatatatacgccctaaag
aatgagatgaagggggagcgtggtgagtctggtgttaaaggagagaaaggagagccagga
ggtggattttatgaccctcgttttggagctgtacaaggaccaccaggaaaccctggacct
accggacctaaaggagattcaatcagaggtccccctggaccgcagggcccaccaggacaa
cctggagttggttatgatggtcgtccaggaaacccaggacctcctggaccgcctggtcct
ccagggtcaccgtcattgccaggagcctatagaccaccactcagtattcccggacctcca
ggtccccccggcccaccaggaattcctggcactggatctggggtgactttcttgaggtct
tatgatataatgatagccacagcacgcagtcagaatgaaggtgctttgatttacattttg
gacagaaatgacctctacctcaaagttcggaatggagtcagacaagtgatgcttggagat
tataaacccttatatggagagctggacaatgaagtggcagcggtccagccgccccctgtt
gttcactattcccaagaccacacagctaacaatggagcagagcagatttctccaccgctg
ccgccgatcgaatttccaaggagggagccagagaacagaaaccccagtccacctgactcc
cgttaccctgacccacgatacccaccctatactgataacaggtacactgatcctgtacaa
ccacacagataccccgtacaaccagagaggaaccccatcactccagcccgccgtcccagc
ccccctgtcggtcaaccagaaggccacgtccacacttctggaccagggctacatcttatt
gccctgaattctccacaagtgggcaacatgagaggcattcgtggggcagacttcctgtgc
ttccagcaggctcgggctgtgggcctgaagggaacgttcagggccttcctgtcatccaaa
cttcaggatctctacagtatagttcgcaaatctgacagagagacattaccaattgttaac
ctcaaggatcaagtccttttcagaagctgggagtctctcttcagtgactcagagagcagg
atgaaggacagtgctcctatctactcgtttgatggcagagatgtcctgcgggacagtgcc
tggccagagaagatgatctggcatgggtccaatggcaggggtcacagacagacggataac
tactgtgagacgtggagggccggagaccgtgcggtgacgggcttggcctcgtctctgcag
gctggccaactcctccagcagacttccagcagctgctccagttcctacatcgtgctgtgc
atcgagaacagctacatgacacaatccaagaaataa
DBGET
integrated database retrieval system
