Puntigrus tetrazona (Sumatra barb): 122352010
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Entry
122352010 CDS
T08985
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122352010 (sox1a)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122352010 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
122352010
NCBI-ProteinID:
XP_043105409
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Position
9:complement(14338698..14340623)
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AA seq
336 aa
AA seq
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MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGGSAGAGYAHMNGWANGTYSGQVAAAAA
AAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASP
SGYGGISYTQHQNSSVASSAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLP
TGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggaccttcattccccgggaccccaaaccaacacgaat
ccggggcaaacgggtccaaactcggggagcaaagccaaccaagaccgcgtaaagagaccc
atgaacgcttttatggtgtggtcccggggccagcggcgaaaaatggctcaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggtgctgagtggaaggtgatgtcagag
gctgaaaagcggccctttattgatgaggcgaagcggttgcgcgccatgcacatgaaggag
catccggattacaaatacagaccgaggcgcaaaaccaagaccctgcttaaaaaggacaag
tactcgttggctggcggcttgcttggcggcgcgggtggcggggtcgggatgagtcctgca
ggggtcggccagaggttggagagtcctgggggtcacggaggctcggccggcgctggctac
gcgcacatgaacggctgggcgaacggcacttactcgggccaggtggccgccgcggcagca
gcggctgcgatgatgcaggaggcgcagctcgcctacagccagcacccgggcagtgggtcc
caccatcaccacgctcatcaccatcacccgcacaacccccagcccatgcaccgctacgat
atgaccgctctccagtacagccccatctcgaactcccagagctacatgagcgcttctcca
tccggctacggtgggatttcatacacgcagcatcagaactccagcgtcgcttcttctgcc
gccatcggtacgctgagctcgctcgtcaagtccgaacccaatataagccctccggtcacc
acacactcccgaggcccctgccccggagacttgagagagatgattagcatgtatttaccg
accggcgagtccggggatccgtccgtgcagagcagactgcatgccttaccgcagcactat
cagagcacaaccgccggagtaaacggaactgtcccattgacgcatatttga
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