Puntigrus tetrazona (Sumatra barb): 122352938
Help
Entry
122352938 CDS
T08985
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122352938 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ptet01009
]
122352938 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122352938 (pcdh1a)
Protein phosphatases and associated proteins [BR:
ptet01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122352938 (pcdh1a)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122352938 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
122352938
NCBI-ProteinID:
XP_043106643
LinkDB
All DBs
Position
10:complement(6734920..6806411)
Genome browser
AA seq
1190 aa
AA seq
DB search
MDLPVVLFLLWGLLLDLLTGAVGGILYRVHEEQPPSTLIGSLAADQGLPDTGHLYKLEVG
APYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE
VQDINDNTPQFPSPVLTLSVPENTHVGALFSIPLATDKDTERNGVADYTLTAGPEAVALF
GLQVAEDRGEKLPQLIVLGSLDRERKDSYDLTIKAVDGGNPSRYSSALLRVVIADANDNA
PQFEKSSYEAEVAENSPIGHSVLQVKANDSDLGPNGEIEYTLHQAIDPVPKLLRIDRSSG
IIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTH
SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYF
LQTTTPLDYERVREYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAE
ENQPGEKVVDVIASDADSGTNAELVYSIIADSSTRGLFEIDPNSGEVRARSPLDREHKER
YEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQ
DMDEGENAQVLLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFIRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA
GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVIKVSDRGKPSRHAIALVHIYVNETIA
NVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR
LQREAKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKF
NLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPAAN
TFVGTGGDDNSTGSDQYSDYSYKTNQPKYSTKTLPHRRVTFSTANPVQDQQDSSQQSYYD
SGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNC
SQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGEENRP
RLPPSRSAYSSSDHAPSDHAPLEEVPLSVTSEFPPTSPPSNHASKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatctcccagtggtgttgtttctgctgtggggactgttactggacttgctgactggt
gcagtgggtggcattctataccgtgtgcatgaggaacaacctccgagcacactgattggc
agtcttgcggctgaccagggcctaccagacactggacacctgtacaaactggaggtgggc
gctccctatctgcgggtggatggcaaaactggagatatctttaccactgagatccccata
gacagagagacactgaaggattgtcgtaataaaggcaaaccttgctttctggagtttgag
gtgtccgtcacagacctcattcagaatcagagtccacggctgatagaaggaaggatcgaa
gtgcaggatatcaatgataacacaccacagttcccctcacctgtccttaccctctcagtt
ccagagaacacccatgtgggtgcactcttctcaattccactggccactgacaaagatacg
gagagaaatggagtagctgactacaccctaacagcaggaccagaggcagtagcactgttt
ggtctgcaagttgcagaggaccgaggtgaaaaattacctcagctcattgtattgggaagc
cttgatagagaacggaaagactcctacgatctcacaatcaaagccgtggatggaggcaat
ccttctcgctacagcagtgccttgctgagggtcgtcattgctgatgccaacgacaatgca
cctcaatttgaaaaatcctcctacgaagcagaggtcgcagagaacagcccaattggacac
tctgtgttacaggtgaaggctaatgattcagacttgggtcctaatggtgagattgaatac
acgttgcatcaggccattgatcctgtgccaaaacttctccggatagaccgctcatcaggc
atcatatatgttaaaggcccactggatcgtgaggagatcaacaatttgaagttttatgtg
gttgcacgagacaaaggcccttcacccaaaagttcgaaaacatatgtttctattgatgta
accgaccagaatgacaatgcaccagcagtggagattcgaggtattggtcttgtgacccat
agtgatggagtagcaaacatttcagaggatatgcctgtaggcactgcagtggcactggta
caggtttcagacaaggatgagggagagaatgccgtggtgacctgtgtggttgctggtgat
gttcctttccagcttcggccagccagtgattcatcagttgacaacaagaggaagtatttt
ctgcagaccacaacacctctggactatgaaagggttagggaataccgtgtggagatagtg
gcagtggattcaggcaatcctgctctgtccagcactaactcgctaaaagtccaagtgact
gacacaaatgacaattcccctatattctcaccgactctgtttgaagtagagtttgctgag
gagaaccagccaggagaaaaagtggtagatgtaattgcctcagatgcagacagtggcact
aatgcagagctggtctacagcattattgcggactcttcaacaagaggactttttgagatt
gaccctaactcaggtgaagtacgtgctcggagccctcttgatcgtgagcacaaggagcgc
tacgagttccgtgttactgcagcagataaaggggttcccagtcacaggggtactgctaca
gttgtgatcaaggtgcttgatcggaatgacaatgatccaaagtttatgctgagtggatac
agcttctcagtcttggagaacatgccaccccttagccctgttggcatggttacagtacag
gacatggacgagggcgagaatgctcaagtgctactttctgtggaacccgatgtaggcaaa
tttgtaatccagaatgggactggcactattctgtccagtatctcatttgacagagagaag
gagagcagttacacattccgcttgaaagctgtagatggaggggatccaccaagatcctcc
tatgttggtgtgaccatcaatgtcctcgatgagaatgataatgcacctgttgttaccaaa
ccatctaactcatccttcatacgtctctctcccatggctgctccagacagtgttgtggaa
gtggtcgaagcagaggacattgattccggttcgaatgctgagctagtatatagcattgct
gggggaaatccacatgacctattttacatctctccatctaatggcgaaatcacattaacc
aaggaactaactcgcaaacacagtggtctgcatcgactggtgataaaagtgagcgataga
ggcaaaccctcccgccacgccattgccttggtacacatttacgtaaatgaaacgattgcc
aatgtaagtcacgtggaggcgcttgtggggcatagcttgtacaccccactggacatggac
attgcaggagacccagattatggtttggctgcccaaagaagcaacattgtatatggcagt
ttagctggagtggcgggagtggtcactgtgattgttgttgtggttttcatcaggcatcgc
cttcaaagagaagctaaaagtggttatcaggctggcaagaaagagaccaaagatttgtat
gcccccaagcaaggtccaaaaagtggcaaagggagaaagggtaaaaaaggtaagccacca
aagtcacctaaacctcttggagaggatgaggaagtcagccttcaaaagagtctgaaattt
aaccttgatggggtcaatgacagccccaggatccatttgcctctgacatatccgcctgga
agccctgacctaggcaggcactatcgttcgaattccccattgccctccatccagctccag
gcccagtccccatctgcctcccaaaagcatcaggctgtccaggagctccctgctgccaac
acctttgtgggaacaggcggcgatgacaactccaccggctcagaccagtactcggattac
agctacaagaccaatcaaccaaaatacagcacaaaaacgctcccgcatcgcagagtgacg
ttctccacagccaatcccgtgcaagatcaacaggactcctctcagcagagttactacgac
agcggtctggaggagtcagagacccccagcagcaagagctcttcgggaccgcgtatcggc
cccctcgccctgcccgaggaccactacgaacggaccacccctgatggcagcatcggagag
atggaacacccagaaaccgatattcgctcactgcctgatgttgccatgacgggaaactgc
agtcaggagtgcagcgagctgggtcactcagatgcctgttggatgcccggtcagccttcg
cccgttcgcaagacccgcaacccccctaaactatccacgtttgtgccttatcaggagagg
gggagcctgggacgcctggccaatgggagcgttaggctgggaggagaggagaacaggccg
cgcctcccaccttcccgtagtgcctactccagtagtgaccacgcccccagtgaccacgcc
ccattggaggaggtgcctctgagcgtgacgtcagagttcccgcctaccagccccccctcc
aatcacgcctcgaaaagagaaatatacctgtga
DBGET
integrated database retrieval system
