Puntigrus tetrazona (Sumatra barb): 122352967
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Entry
122352967 CDS
T08985
Symbol
vps11
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04140
Autophagy - animal
ptet04148
Efferocytosis
ptet05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122352967 (vps11)
04148 Efferocytosis
122352967 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122352967 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122352967 (vps11)
Membrane trafficking [BR:
ptet04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122352967 (vps11)
Hops complex
122352967 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
Beta-prop_WDR3_1st
zf-rbx1
zf-RING_2
Clathrin
zf-C3HC4
zf-C3HC4_2
VPS11_C
zf-RING_5
zf-ANAPC11
WD40_CDC20-Fz
UTP6_C
TPR_GEMI5
zf_RING_Vps8_fungal
zf-RING_Vps41
zf-RING_UBOX
WHD_MalT
zf-RING_16
zf_RING_Vps8
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
122352967
NCBI-ProteinID:
XP_043106694
LinkDB
All DBs
Position
10:complement(11713900..11719645)
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AA seq
940 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDTSERKWENFQLPVGIAACDSGRGHIVLGDMDGQIWFXTHS
LQLSSFQAYKLRVTHLYQLKQHNILVSVGQDEPGINPLVKVWNLDKKDSGSPLCXRIFPA
IPGNKPTEVSCLSVHENLNFMAIGFTDGSVAEWTXGGDITRDRHSKTLSLHEGNCPITGL
AFRQAGKVTRPVCFATLEKVQCYTLSNERVPSVSELDTHGYALRCSLTDPSQDSQFIVAG
DDHAVYLYQPDERGPCLRFDGRINLTHWHTGYLLLLTHNNKSPSKSDYGGRQTXPTEKHI
LTIYDLLTTSSXTQCGVDDVIDVLAAWAVFTILTRDRTLYMLQEKDTQTKLEMLFKKNLF
VMAINLAKSQHLHNDGLSEIFRHYGDHLYVKGQGDGAIQQYIRVIGKPRTSXCNQKFLDA
QRIHNLTSVHLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAI
KVLRQAGYHKSTPCFWQRHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAERVMKRYGR
XLMHHVPESTTILLKRLCTDYHPSKDSTDRDSLDRPAENKANPRKEFIPVFXNNPRELRA
LLEHMIEVDPFSPEGVYDTLLELRLQDWAHEQDPEKKKVLQEAALSLLRSDNTVFDKALV
LCQMHNFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDSEVCLWEQALQAIL
HIKKENCKAYISEVLQHIDENNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERDQLEIE
EDERKIRQYREKRPPSRAEIQELKTCAKIFQKTKCSMCNSPPELPGVHFLLCGHTFHQHC
LESFVESEAECPTCTPENRKVMDMLWVAQDQKRRFHDHFLTDSSNVXRRFSVIXDYFGRG
VAXQQTHSLITDLQEVARVXAGNLEAELNRDLPINTKRNV
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcttacagtggagacgttttgtgtttttcgataaagaaacggtgaaagat
acgagcgagcgaaaatgggaaaatttccaactaccggtgggaattgcggcctgtgattca
ggtcgaggacacattgtgcttggagatatggatgggcagatctggtttntgacccactcc
ctgcaactgtctagttttcaggcttacaaactgcgtgtgacacacctgtaccagctgaaa
caacacaacatcctggtatctgtgggtcaggatgagcctggcatcaatcctctggttaag
gtgtggaaccttgataagaaggacagcggcagtcctctttgtnaccggatatttcctgcc
atacctggaaacaaacctactgaagtgtcttgtctaagtgtacatgaaaaccttaatttc
atggctataggcttcacagatggcagtgttgctgaatggacgtaagggggtgacatcacc
agagacagacacagtaaaactctcagcctccatgaaggcaactgtccaatcacaggcctg
gctttccggcaggctggcaaagtcacaagacctgtttgcttcgccactttagaaaaagtg
cagtgttacacattatccaatgaaagagtaccctcggtatcagaactggacacacacggc
tacgccctccgctgctcgctcacagacccttcgcaggactcacagttcatagtggctgga
gatgatcacgcggtgtacttgtaccagcccgatgagagaggaccctgtttacgcttcgat
gggcgcataaacttaactcactggcacacaggatacctgctgctgctcacccacaacaac
aaatcacccagcaaatctgattatggcggcagacagacantccctacagaaaagcacatc
ctgaccatttacgaccttttgacaacaagttcataaacacagtgcggtgttgatgatgtc
attgacgttctggcagcatgggccgttttcacgatcctaacgagggacagaacgctgtat
atgctgcaggaaaaagacacgcagactaagctagagatgctgtttaagaagaacctgttt
gtgatggccattaacttggctaaaagtcagcatctgcacaatgatggtctgtctgagata
ttcagacattatggagaccatctctatgtcaaagggcaaggtgatggagctattcagcag
tatattcgagtcattgggaagcctcgaacctcataatgtaatcagaaatttttggatgca
cagaggatacataacctgacaagcgtgcacctacaggctctccacagacagtcgctggcc
aatgctgaccacactactctactgctcaactgttacaccaaactgaaggacagctccaag
ctggaagagttcataaagagcaatgaaagcgaggtgcattttgatgttgagattgccatc
aaggtgttacgccaggcaggttatcacaagtcaacgccgtgtttctggcagagacacatg
caccatgaatggtatctaaagatccagcttgaggatttaaagaattatcaggaggcttta
cgctatattggaaggttgccatttgatcaagcagagagagtaatgaagcgttacggaaga
nttttaatgcatcatgtgcctgaaagcaccactatcctcttaaaacgcctttgcactgac
tatcaccccagcaaagactcaaccgacagggacagtctggacaggcctgcagaaaacaag
gccaatcccaggaaggagttcatcccagtatttngcaataacccacgagagctgcgagcg
ctcctggaacacatgattgaagtggatccgttctcacctgagggagtttatgacactctg
ctagagctcagacttcaggactgggcacatgagcaggacccagagaagaagaaagtcctg
caggaggcagcactgtccctgctgaggagcgacaacaccgtgtttgacaaagccctggtg
ctctgccagatgcacaacttcaaggaaggagtgctgtatctgtatgaaaagggcaaactg
taccagcagatcatgcattaccacatgcagaatgaggagtatggaaaagtcgtggaggcc
tgtaaacgctatggggacagtgaagtgtgtttgtgggaacaggctctccaggctattttg
cacataaagaaagaaaactgtaaggcctacattagtgaagtcctgcagcacattgatgaa
aacaacttgatgcctccacttctggtggtgcagactttggctcataattccacagcatct
ctctcagtcataaaagactacctgataaataaactggagcgagaccaacttgagatcgag
gaagatgaaagaaagattcgacagtatagagagaaacgcccaccttctcgagctgagata
caggaacttaaaacctgtgcaaagatcttccaaaagaccaagtgcagcatgtgcaacagc
ccaccagagctgccgggcgtgcacttcctcctgtgcgggcacactttccatcagcactgc
ctggagagctttgtagagagcgaggccgagtgccccacctgcacccctgagaacaggaaa
gtgatggacatgctttgggtggcgcaagatcagaaacgcagatttcatgatcattttctt
acagacagctcaaatgtttaacgacgcttctctgtcatcnatgactattttggtcgtgga
gtagcttaacaacaaactcactctctgattacggatctccaggaggtggcaagagtgtga
gctggcaatctggaggctgaattaaacagggatctgcctattaacaccaagagaaatgtt
tga
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