Puntigrus tetrazona (Sumatra barb): 122353116
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Entry
122353116 CDS
T08985
Name
(RefSeq) protocadherin alpha-C2-like isoform X1
KO
K16493
protocadherin alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
122353116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptet03036
]
122353116
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122353116
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
122353116
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122353116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
122353116
NCBI-ProteinID:
XP_043106917
LinkDB
All DBs
Position
10:7163272..7196404
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AA seq
989 aa
AA seq
DB search
MAVAGICDCLDKKVPLSFLLLLLLLFCGLALGQIRYSVPEESESGTIVGDIAQDLGLDIR
KLSTRKIKVTSDSSKRYVDHKNGKLLVNERIDRETLCDTSAACVLNLEVLLEDPNEDHNV
EVEITDVNDNTPQFPRDEYQLEITESALPGSRFPIEHAQDPDIGTNSVRLYRLSPNEHFA
LDSNKPSLNTKHIELVLKKPLDRELAPYHQLILTATDGGTPARTGTAKINVRVLDSNDNN
PVFDSSVYKVKLLENSPKDTLVIKLNATDQDEGTNGEVLYSFSSYTPDRVRQMFSMDTNT
GEIRVKSNVDYEDTNSYEMYIQAMDKGPAPVAAHCKVVVEVVDVNDNVPEIVLSSLSSPV
REDARADTVVALISVTDRDSGPNKQVTLEIQPGLPFKIKSFRNYYTLVTSAFLDRETTAA
YNVTLSATDAGNPPLSSQKTIQVDVADVNDNPPRFEQTSYTVYVTENNAPGASLCTVKAQ
DADVNENARITYTVLNDNNHGIPVTSYVSVKADTGVAYALRSFDYESLREFHFQVKAQDG
GIPPLSRVATVYIYIMDQNDHAPEIVSPPANGTRLTETVQKNAEPGSLITKVVAYDADAG
QNAWVVYVLDQASDLDLFKVHEHTGEIRTTRRVLEDNSTSFSLTVLVRDHGEPPLSSTAT
INVAVMEVPLKVTPDPKRIIRPHSSLLFSNVTLYLIVALSATTFVFLVTVVVLAIVRCHA
YCTQPGSCSPCCVSQKAQVEGGSGGGGGGGGGGGSQPNNNVVLRRDLKVEPHYIEVRGNG
SLTKTYCYKTCLTATSGSDTFMFYNTGRPISGTWGSERFFTGGSGFVRRLSMPDAALQPK
GPNADWRYSASLRAGVQSSVHMEEASAVMQGAQGMLVQNWPTVSSAADGEGEGQLSPPVG
AGINSNSWSFRYGAGPGYGPPQALKPGEIPPEAFIIPGSPAIISIRQDPGAVDDKGEFIT
FGKKEEKKKKKKKKEKKDKKDKGKDDGEE
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcagggatatgtgattgcctagacaaaaaagtgcctctttcttttttgcta
ttattattattattattttgtggccttgctctcggacaaatacgatattccgtgccagag
gaatcggagagtggaacgattgtaggtgatattgcacaggatttgggtttggatattaga
aagctctccacccgaaagattaaggtaacctctgacagcagcaaaaggtacgtggaccac
aagaatggaaaattattggtaaacgagaggattgacagagagacgttgtgtgatacgagc
gccgcgtgtgttttgaatctagaggttcttcttgaggacccaaacgaagaccataatgtc
gaggtggagataacagacgtgaatgataatacgccgcagttccccagagatgagtatcaa
ttggagatcacagagtcggctttgccgggctctcgttttccgatcgaacacgcgcaagat
ccggacatcggtaccaattcggttcgattgtaccggctcagcccaaacgagcatttcgct
ctcgattccaacaagccttcgttgaatactaagcacatcgagctcgttctgaaaaagccc
ttggatcgcgagctcgccccttaccatcagttaatcctgacagcgacagacggtggcaca
ccagcacgaacaggtaccgcaaaaattaacgttcgcgtcttggattcgaatgacaacaac
cccgtttttgacagctcggtatataaagtcaagttgcttgaaaattcgcccaaagacact
ttggttatcaaactgaacgccacagaccaagatgaaggaacaaacggggaggtgctttat
tcattcagcagttacaccccagacagggtcaggcagatgttcagcatggacaccaacact
ggagaaatcagagtcaagagcaatgtggactacgaggacactaattcgtatgaaatgtac
atccaggccatggacaaagggccagctccagtagcagcccattgcaaagtggtggtggag
gttgtggatgtcaacgacaacgttccagagatcgtcctctcgtctttgtccagtccagtg
cgtgaagatgcccgcgcggataccgtggtggccctgatcagtgtgactgaccgcgattct
ggccctaacaaacaggtcacccttgaaattcaacctggccttcctttcaaaatcaagtca
tttagaaattactacaccttggtgacctctgcctttcttgaccgcgagaccacagcagcc
tataacgtcaccctcagcgctaccgatgccggcaaccctcccctttcgtctcagaagacc
attcaggtggacgtcgcagatgtcaacgacaaccctccacgctttgagcagacctcctac
actgtgtatgtcacggagaacaacgctcccggagcctcgctctgtaccgtcaaagctcag
gacgcggatgtcaatgaaaacgctcgcatcacctacacggtcctaaacgacaacaatcac
gggattccggtcacctcctacgtgtcggttaaagcggacactggtgttgcctatgccctt
cgctcctttgactacgagtcgttacgggagtttcacttccaggttaaagctcaggacggg
ggtatcccaccactcagccgtgtagccactgtctacatctacataatggatcaaaacgac
cacgcgcctgagattgtgagtcccccggccaatggcacgcgcctaacagagacggttcag
aaaaacgcggagccaggaagtttgatcacaaaggtggtggcctacgatgctgatgctgga
cagaacgcttgggtcgtctatgtgctggaccaggccagcgatctggatctgtttaaagtt
cacgaacacacaggagaaattcgtacaacgcggcgagtccttgaagacaactccacctct
tttagtttaaccgtactggtaagggaccatggcgaaccacctctgtcatccaccgctacg
atcaacgtcgctgtcatggaggtgccactaaaagtcacgcctgaccccaaacgaatcatc
cgccctcatagctctctcttgttttccaacgtgacgctgtacctcattgtagccttgagc
gcaaccacattcgtgttcttggtgaccgtggttgtgctggctatcgtgcgctgccatgcc
tactgcacccagcctgggtcctgttcgccctgctgcgtgtcccagaaggcccaagtggaa
ggaggctcaggagggggcggcggaggaggtggtggtggcggctcacaacccaataacaat
gtggtgcttagacgagacctcaaggttgagcctcattatattgaggtccgggggaatggc
tctctgaccaaaacctattgctacaagacctgtctgacagctacttcagggagcgacacg
ttcatgttttacaacacgggccgacccatcagtggcacctggggctccgagcgctttttt
acaggagggagcggatttgttcgcaggcttagcatgccagatgcagcattacagcccaaa
ggaccgaatgctgactggcgttactctgcgtcgttgagggcaggagtgcagagttccgtg
catatggaggaggcatcagctgtgatgcagggagcgcaaggcatgctagtccagaactgg
ccgacggtctccagtgcagcagacggggagggagagggacagctgtctcctcctgtcgga
gccgggatcaacagtaacagctggagcttccgctacggtgcaggccccggctacggccct
ccacaagccctgaagccgggagaaatcccacctgaagccttcatcatacccggctctcct
gccatcatctccatccgacaggacccgggagccgtagatgataagggcgagttcatcacc
tttggaaagaaagaggagaagaagaagaaaaagaagaagaaggaaaagaaggacaagaag
gataagggaaaagatgatggcgaggagtaa
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