Puntigrus tetrazona (Sumatra barb): 122354216
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Entry
122354216 CDS
T08985
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122354216 (ptbp1b)
03041 Spliceosome [BR:
ptet03041
]
122354216 (ptbp1b)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
122354216 (ptbp1b)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122354216 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122354216
NCBI-ProteinID:
XP_043108283
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Position
11:14875039..14891487
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AA seq
565 aa
AA seq
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MDGRLETELYPMGSTYAELDVVHDIAVGTKRGSDELFSCVSSGPYIMSSAANGNDSKKFK
GDIRSPGAPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQ
TMVTYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMTLGPVD
PSGLTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLT
AQHAKLALDGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPALEHHA
VAAAFATPGIISAAPYAGAHAFPPAFAIQQAAGLAIPGVPGALASLTIPGAAAAAAAASR
LGFPVLPGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTH
TGLAMSHLNGQKLYGRPLRITLSKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNY
SNIFPPSSTLHLSNIPPSVVEDDLKMLFASNGALVKNFKFFQKDRKMALIQMGSVEEAIE
SLIQFHNHDLGENHHLRVSFSKSII
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagagactgaattgtatcctatgggatcaacttacgcagaattagac
gtcgttcacgatattgcagttggcacaaagagaggatctgacgagctgttttcctgtgtt
tccagcgggccctatatcatgagctcagcagccaacggcaacgacagcaagaagtttaaa
ggcgacatcagaagtcctggcgccccgtccagagttatacatgtccgcaagctgcccaat
gacatcaacgaagcggaagtcatctcccttggccttccttttggcaaagtcaccaatctg
ctcatgctgaagggaaagaaccaggctttcttggaaatgaacactgaagaagcagcccag
acgatggttacgtactactcctctgtaacacccgtcatcagaaatcatcccatcttcatg
cagtactcaaaccacaaagagctaaaaacagacaactcaccgaaccaagtgagggcgcag
gcagcactgcaggcagtgaatgctgtccagacaggtagcatgactctaggtcccgttgac
ccatctggtttgaccggccccagccctgttctgagggtcatcgttgaaaacctcttctac
cccgtgaccctagatgtcctgcaccagatcttctcgaaatttggcaccgtgctgaaagtg
atcactttcacaaaaaacaaccagtttcaggctctcctccagtttgctgatggcctgacg
gcacaacatgccaagctggccctagatggacagaacatctacaatggctgctgtactctg
cgcatcagcttttccaagcttaccagcttaaatgtcaaatataataacgacaagagtcgt
gactacacccgtccggacctgccaactggggacagccaaccggctcttgaacatcacgct
gtggcagctgctttcgctactcccgggatcatctccgctgctccatacgccggagcgcac
gccttccctccggcttttgctatccagcaggctgcagggttggcaatacctggggttccc
ggagccctcgcctcgctaaccattcccggggcagcggcggccgctgcggccgcgagcagg
ctgggctttcctgtccttcccggcacacactgcgtcatgctggtcagcaacctgaaccct
gagagagttacgccccactgcctctttattctcttcggtgtatatggggatgtactgaga
gtgaaaatcatgtttaataagaaggagaacgctctcatacagatgtctgatgggacacac
acaggcttagcaatgagccatctcaatgggcagaagttgtacggcaggcccctgcgcatc
acgctgtccaaacacacgactgtccagatgccacgtgagggacacgaggaccagggtctc
accaaagactacagcaactctcctctccaccgcttcaagaagccaggctctaaaaactac
tccaacatctttcctccctcatctaccctgcacctgtctaacatcccaccctcagttgtt
gaagatgacctcaagatgctctttgctagcaatggtgctcttgtcaagaacttcaagttc
tttcagaaggatcgcaagatggctctgattcagatgggttcagtggaggaagcaatcgag
tccctcatccagttccacaatcatgatctcggagaaaaccaccatcttagggtttctttc
tccaagtccatcatttga
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