Puntigrus tetrazona (Sumatra barb): 122354346
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Entry
122354346 CDS
T08985
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptet03009
]
122354346 (pdcd11)
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
90S particles
Other 90S particles
122354346 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
OB_RRP5
DUF2110
Motif
Other DBs
NCBI-GeneID:
122354346
NCBI-ProteinID:
XP_043108470
LinkDB
All DBs
Position
1:24251353..24265835
Genome browser
AA seq
1491 aa
AA seq
DB search
MLGCVKQVTDFEAVVGFPSGLVGYLQICNICDAYSSILMDNLESEDQLKEVVPLAQLLTP
GTLIRCVVLSLDSVKEGLISLKVSVNPKDVNKVLNSGSLKPGMTLSGCVESVEDHGFLVD
IGISGTKAFLPKQSTSSKKDMNVGQYVTILLEEVKNDGRVVRLSQDPQALRKAFAVAQQG
WTLDTLLPGLLIQGKIKRVTPHGLIVTYLSSFTGVVDFLHLDEDKASTYSAGDEVVARVL
YVDPSTRHVGLSLRGHLLPPSGAVLDIASSERISEVVEGCKMTALHHQSGALMKMPDGTA
AFVHKNLLKEASEEFNPNRLLTQPEHTLRIIDYSPVEQMHIGTLRRSTVEVEFFRYQDIK
VGQILEGTVTYLQKYGAYVRITDHIRGFIPNIHLADVVLKNPEKLFTSGRQVKCRVLSVD
AQQKKLCLTRKKALVESTLPLFLSYADAKVGRISHGYIVSVKDFGCIVRFYGDVKGLVPM
QELSKDFVTNPEELFFVGQVVQAKVLTCTEEKNLLRLSFRAINEGDINEVQTADFQFEVG
KTVEVKVYRKVLDGLEVSIVPEEVPAFIPTVHLSDHVTNCLPMWTVLEEGDTFSVTCLSK
TKKGIILTRKPLLKASLEDGSMPKIFSELQVGLNMVGWVKSIMDYGLFIHFPYGLFGLAP
KSVMCDEFITDTSNIFNIGQTVVAKVTNLDHENHRFLVSLKVSELSLLEEGSQARLVQGL
KERKAIFDIRSDSELSGFSLGDKLKVTVGESKEDGTVTLTSDKLSEASVLVSKYHTEGVN
VSPGCKLTALVLHVDLFKSEVHVTLLPELTGATKKKLEKGSKLSATIQFTDKDFAVVSLG
DTGHLTIISTHLHINDVLNSKKFIVGSSLDVTVEEPSCEALGGLPLAEYQKENERKGRST
STGVRELMTVKVKKVKPMEVTVTLPSGTTGSVHVSQISESPAVGSFPTSTLKIGSEVKAR
VIGARSVHTRKFLPFSHPDFSVSIPVLSLLPSITGSKGRNVKIEKLNFKPGDDVICFASK
FDKELQCLDVHVKPNVMGTVDLLSMIKKPSHAQHPHTLFKVGQTISAKVVRLGTSKPFRL
SLSLIGTYKLEPGMITMAKIWKIVPHMGMFLQLPFGNRGLVSVTDLSDEFTANPLEPYKL
GQLVRCYIIEMKGVYFNASLRPSRLYRDHNKNITDPEIQSILDVKSGQIVRGYVTSFVNV
GIFVRLSRAVTGRVVLRKATKYFVENEKPLSENIPVNFLVTAKVLSVNTKDEHVKLSLLT
KDTGEPDILPESLELPLRQIRERELKKEQAQKGDEKATKRKQVNSDSQQQDDETDGQTIK
KKKVTQEKQEHDEEAPDMKQVNPGSQQQDDETDGQTIKKKKVPQKKQEHDEEATNMKQVN
PGSQQQDNETNGQTIKKKKVPQKKQEHDEEAPKNSDSQQQDDETDGQTIKKKKVKQKKQE
HDEEAPDMKQVNPGSQQQENETDGQTIKKKKNTEKKETLKRKLKRRIMTVV
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgctgggttgtgtgaagcaagtaacggactttgaggcggttgttggttttcccagcggt
cttgtcggttaccttcaaatctgcaacatttgcgacgcctattccagtatccttatggac
aatctggagtctgaagaccaattaaaggaagtcgtccctctcgcacagctgcttactcct
ggaacgctgatcagatgcgttgtgctgtctctcgactcggttaaagagggtcttataagc
cttaaagtgtccgtcaaccctaaagatgttaacaaggtgttaaattcaggttctttgaaa
cctggaatgacgctgagtggttgtgtggagagtgtggaagatcacggcttcctggttgac
atcggcatcagtggcactaaagctttcctgcccaaacaaagcacatcctcaaaaaaagat
atgaatgtgggtcagtacgtgacgatcctgctagaggaagtcaagaacgacggacgtgtg
gtgcgtctgtcccaggatccccaggctcttagaaaggcctttgcagtcgctcagcaagga
tggactctagacactctcctgccgggacttctgatccagggaaagatcaagagggtcact
cctcatgggcttatcgtgacgtacctttcatcttttactggcgtggttgattttctgcac
cttgatgaggacaaagcatctacctacagtgcaggagatgaagtcgtggcgcgggttctg
tatgtggatccgtccacgaggcatgtgggcctgtccctgcgtggacatctcctgccacca
agcggcgctgtgctggatatcgcctcgagcgagcggatcagcgaggtggtggagggctgc
aagatgactgctttgcaccatcagtctggagctttgatgaagatgcctgacgggaccgca
gcctttgtgcataaaaacctcttgaaggaggccagtgaagaattcaacccaaaccgcttg
cttacccagcctgagcacactctgagaatcatagactacagtcctgtggagcaaatgcac
atagggacactgcgcaggagcactgtcgaagtagagtttttcagatatcaagacatcaaa
gtggggcaaattcttgagggtacagttacgtatttgcagaaatacggtgcttatgtgagg
ataacggaccacatcagaggatttatacccaatattcacctggccgatgtcgtcctaaag
aacccagagaagttgttcactagtggacggcaggtcaagtgcagggtgctgtcagtagac
gctcagcagaagaagttgtgcctgaccagaaagaaggcccttgtcgagtctacgcttcct
ctcttcctgtcctacgctgatgccaaggtgggccgcatctcccacggctacatcgtttct
gtgaaggactttggctgcatcgttcgtttctatggagatgtgaagggtctggttcctatg
caagagctgtctaaagattttgtgactaatccagaagagctcttcttcgttggccaggtt
gtccaggccaaagtcttgacgtgtactgaagaaaagaacttgctacgtttatccttcagg
gccattaatgagggagacataaatgaggtgcagactgccgattttcagtttgaggttgga
aagacggttgaagtcaaagtgtaccgcaaagtcctggatggtctggaggtgtccattgtt
cctgaggaggtgccagctttcatacccacagtgcacctctctgaccatgtgaccaactgc
cttcccatgtggacggtgctggaggagggtgacactttctctgtgacgtgtctcagcaag
accaagaagggcattattctcactaggaaacccctgctgaaggcctctctggaggacggc
agcatgcccaaaatcttctctgagctccaggtggggctgaatatggtcggctgggtgaag
agcatcatggattatggactcttcatccatttcccctatggactcttcggcctcgctcct
aaatctgtcatgtgtgacgagttcatcacggacacctcgaacatctttaacatcggccag
acggttgttgccaaagtcactaatttggaccatgagaaccacaggtttctggtcagtctg
aaggtctcagaattaagtctcttagaggaagggtcccaggccagactggtccagggtctg
aaggagaggaaggccatctttgatatcagaagcgattctgagctctcaggtttttcactt
ggagataaactgaaggtgacggtgggagagagcaaagaggatggcacggtcacgctgacc
tcggataagctcagcgaagccagtgtattggtttcaaagtaccacacagaaggtgtgaat
gtgagtccaggctgcaagctcactgcactggttctccatgttgaccttttcaagtccgag
gtccatgtgactctgcttccagagctgaccggagcgacaaagaaaaagttggaaaaaggc
tccaaactgtctgccactatccagttcaccgacaaagactttgctgtcgtctcattgggc
gacaccggtcacctgaccatcatttccactcaccttcacataaatgacgtcttaaattca
aagaagtttattgtgggttcctctctggatgtgaccgtggaggagcccagctgtgaggcg
ttgggaggacttcctcttgccgagtatcagaaagagaacgagcggaagggcagatctacg
agcacaggtgttagggaattgatgacagtgaaggtaaagaaggtgaagcccatggaagtg
actgtgacgctgccgtccgggaccacaggaagtgtccatgtatctcagatcagtgagtcg
cctgcagtcggcagcttcccaacatcgaccctgaagatcgggagcgaggtcaaagccaga
gtgattggagcacgctcagttcacactcgcaagttcctgccattctctcatcccgacttt
agtgtttctatccctgtactctctctactgcccagcataaccggttctaaaggaagaaat
gtgaaaattgagaaattaaacttcaaacctggagatgacgttatatgctttgcatcaaag
ttcgacaaagaattacaatgcttagatgttcatgtgaagcccaacgtcatgggaactgtc
gatctgttgtccatgattaagaaaccaagccatgctcaacacccgcacacgctttttaaa
gtgggacagaccatttctgcaaaggttgttcgtcttggtaccagcaagccctttcgtctt
tctttgtcactcatagggacatacaagctggagccagggatgatcaccatggcgaagatt
tggaaaattgtgcctcacatgggaatgtttctccaactaccattcgggaataggggtttg
gtcagtgtaacggatctctctgatgagttcacagcaaacccgctagagccctacaagctg
ggccaactagtccggtgctacattattgagatgaaaggcgtatacttcaatgcttcgctg
cgtccttccagattgtacagagaccacaataagaatattacagatccagaaattcagtca
attttggatgtaaagagtggccagattgtccggggttatgtgacatcttttgtgaatgta
ggcatcttcgtgaggctatcaagggctgtcacaggaagagttgttttacggaaagctaca
aaatactttgtggagaatgaaaaaccgctttccgaaaacattcctgtgaattttttggtg
acagccaaggttctcagtgtgaacaccaaggacgagcacgtgaagctttcgctgctgaca
aaggacactggtgaaccagatatcctcccagaatccctcgagcttccactgcgtcagata
agagagcgagagctgaagaaagagcaggcgcaaaaaggtgacgagaaagccaccaagagg
aagcaggttaattccgatagccagcaacaagacgatgagacagatggacagacgattaaa
aagaaaaaagttacacaggaaaagcaagaacatgatgaggaagcccctgacatgaagcag
gttaatcctgggagccagcaacaagacgatgagacagatggacagacgattaaaaagaaa
aaggtcccacagaaaaagcaagaacatgacgaggaagccaccaacatgaagcaggttaat
cctgggagccagcaacaagacaatgagacaaatggacagacaattaaaaagaaaaaggtc
ccacagaaaaagcaagaacatgacgaggaagcccccaagaattccgatagccagcaacaa
gacgatgagacagatggacagacgattaaaaagaaaaaagttaaacagaaaaagcaagaa
catgacgaggaagcccccgacatgaagcaggttaatcctgggagccagcaacaagagaat
gagacagatggacagacgattaaaaagaaaaaaaacacagaaaagaaggaaacattaaaa
agaaaactaaaacggaggataatgacagtggtgtag
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