Puntigrus tetrazona (Sumatra barb): 122354417
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Entry
122354417 CDS
T08985
Symbol
ushbp1
Name
(RefSeq) colorectal mutant cancer protein isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ptet03037
]
122354417 (ushbp1)
Cilium and associated proteins [BR:
ptet03037
]
Primary cilia and associated proteins
USH complex and associated proteins
122354417 (ushbp1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF2089
MPS2
Motif
Other DBs
NCBI-GeneID:
122354417
NCBI-ProteinID:
XP_043108528
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All DBs
Position
11:13316580..13329122
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AA seq
642 aa
AA seq
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MEQRSDSLVSADSELMQCETEVNTLLKIISDLNRKMDSLQIPRESPVGVSGFVPQQASMV
DAGAASVKSKTENVCRDSDGLVVNHRGSSELCNELQRVISALETSSGQGRKMLKLQTLNA
ETVRAEHLSAARESWVRATQVLEEMERDLGISYPSALPPEERRRYQRDVLSLHKHNQDLS
ACLKSRQEELMGAERNLMDLEDEKKWLQEKVVDLKRKWLYKVSRSPSFSPSLSSSRTSSP
CFSSPPYPGSPLLSRKLPSSRPDSPSSPCSVDSVLRAEIEKLQRSLERLKARNEHLNGAL
VRRKGESERLSMSLSRQEADSSALHMALTYCEECEEAYGDLLSLCETRKRQNSETNSTPQ
PDLSKSSEEPSSGPPGGAAETEPNSLPEKEFEDKSGVLLQRISRLKQDKAAVCIPQRGEA
GEGKISPDTGTLAGVRGRASSLSKNTKEEKAALLYELVTVREEMSEMRGNLRLLEKERRC
LDLALMVQSAQDSAGALILDSLRDELGERRATQQRIAQNLAKIDVEGGIPGPRNHSILRE
LQAALQREQSLRRKVAALRESLDSALTDSTTQRRISREETARLSRYYTKASSTYRSSRKK
HQEQLWQLEKQSAVMSERHAKEETELSATLEAMEWRREETIL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggagcagagatcggacagcctggtgtcggcggactctgaactgatgcagtgtgagaca
gaggtcaacactttactaaagatcatttctgacctcaacaggaagatggactccctccaa
ataccacgagaaagtccagtcggggtcagtgggttcgtccctcagcaggcctcgatggtg
gacgccggcgcagcatcagtgaagtctaagaccgagaacgtctgcagagactcggacggc
ctcgtcgtcaatcacaggggcagcagtgagctgtgcaacgagctccagagggtcatctcc
gctctcgagacgtctagtggtcaggggaggaagatgctgaagctgcagactctgaatgct
gagacggtccgggcagagcatctctctgcagcgcgggagagctgggttcgggccacacag
gtgctggaggagatggagagggatttggggatctcgtacccctccgctctgccccccgaa
gagagacgtcgatatcagcgggatgttctctcgctccacaaacacaaccaagacctcagc
gcctgcttgaagagccgccaggaagagctcatgggtgctgaaagaaatctgatggatctt
gaggacgagaaaaagtggctgcaggaaaaggtggtggacctaaagaggaaatggctgtat
aaagtgagccgttctccttcttttagtccgtcattgtcctccagtcgaacttcaagccct
tgcttttcctctcctccgtatcctggatccccgctgctgtcccgcaaactacccagctcc
aggccggactccccttcgtctccctgcagcgttgattcagtgctgcgggctgagatcgaa
aagcttcagaggagtctggagcgcctgaaagccaggaacgagcatctgaatggcgctctg
gtcagaaggaaaggagaatcggagcggctgagcatgagtcttagccggcaggaggcggac
agctcggctctacacatggctctgacgtactgtgaggagtgtgaggaggcttacggcgat
ctgctgtccctgtgcgaaaccagaaaacggcagaactcagaaacaaacagcacaccccag
cctgacctctcaaagtcaagcgaggagccatcctccggtccaccggggggcgctgctgag
accgaaccaaacagcttgccggagaaggagtttgaggacaaatctggtgtacttctgcaa
aggatctccaggctgaagcaggacaaggccgccgtgtgtatcccgcagcggggcgaagca
ggagagggcaagatcagtcccgacactggcacgctcgcaggggtcagaggtcgcgccagt
tcactttccaaaaacaccaaagaagagaaagcagctttgctgtatgagcttgtgacagtc
agggaggagatgtcagagatgcgtgggaatctgcggctcctggagaaagagaggcggtgt
ttggacctggccctgatggtccagagtgcccaggattcagctggtgctctgatcctggac
agtctgcgagacgagctaggagagaggagagccactcaacagagaattgctcaaaatttg
gcaaaaatagacgttgaagggggaattcctggtcctagaaatcactctatcctaagagaa
ctacaagccgcactgcaaagggaacagtcactgaggaggaaagtggcggctttacgcgag
tcgctggactcggcgctcacggacagcactactcagagaaggatcagccgagaggagacc
gcacgtctctcccgctactacactaaagcttcaagcacctacagaagttctcgaaagaag
catcaggagcagctgtggcagctggagaagcaaagcgcagtcatgagcgaacgtcacgct
aaagaggagaccgaactaagtgctacgctagaagctatggagtggaggagagaggagaca
atactctag
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