Puntigrus tetrazona (Sumatra barb): 122354527
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Entry
122354527 CDS
T08985
Symbol
eif4a3
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03015
mRNA surveillance pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122354527 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
122354527 (eif4a3)
03015 mRNA surveillance pathway
122354527 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122354527 (eif4a3)
03041 Spliceosome [BR:
ptet03041
]
122354527 (eif4a3)
03009 Ribosome biogenesis [BR:
ptet03009
]
122354527 (eif4a3)
03012 Translation factors [BR:
ptet03012
]
122354527 (eif4a3)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122354527 (eif4a3)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122354527 (eif4a3)
mRNA cycle factors
Stress granule specific factors
122354527 (eif4a3)
Spliceosome [BR:
ptet03041
]
Complex C
Other components
EJC/TREX
122354527 (eif4a3)
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
90S particles
Helicases
122354527 (eif4a3)
Translation factors [BR:
ptet03012
]
Eukaryotic type
Initiation factors
eIF-4
122354527 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122354527
NCBI-ProteinID:
XP_043108666
LinkDB
All DBs
Position
11:11528719..11535114
Genome browser
AA seq
414 aa
AA seq
DB search
MAAAAAPVRKRILKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQXVLLEICSGERRKDVTVFHCISVLQCLDIQVRETQALILAPTRE
LAGQIQKVLLALGDYMNVQCHTCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR
TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPI
RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM
REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNN
RELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgcagctcccgtgaggaagaggatcctgaaggaggaggacatgacgaag
atcgagtttgagacgagcgaggaggtggatgtgacgccgacgtttgacacgatgggcctg
agggaagacttactgcgcgggatctacgcgtacggttttgagaaaccatctgcgatccag
cagcgagccatcaaacagatcatcaagggacgagacgtcatcgcccagtgagtcctgctg
gagatctgttctggagaaaggagaaaggatgtgactgttttccattgtatctcagtgctg
cagtgtctggatattcaggttcgagagactcaagctctgattctggctcccaccagagag
ttagcaggacagatccagaaggtgctgctggcgttgggagactacatgaatgttcagtgt
cacacctgcatcggaggcacaaacgtgggcgaagacatccggaagctggactacggtcag
catgtagtggctggaacgcctggccgagtgttcgatatgatccgcaggaggagtctgagg
actcgggccattaagatgctggtgttggatgaagcggacgagatgctgaacaaaggtttt
aaggagcagatctatgacgtgtacagatacctgccgccggccactcaggtgtgtctgatc
agcgccacgctgcctcacgagatcctggagatgaccaacaagttcatgaccgaccccatc
cgcatcctggtcaaacgtgatgagttgactctggagggcatcaagcagttcttcgtggct
gtggagcgagaggagtggaagttcgacactctgtgtgacctctacgacacgctgaccatc
acacaggccgtcatcttctgcaacaccaagcgcaaggtggactggctgacggagaagatg
agggaggccaacttcaccgtgtcctcgatgcacggagacatgccccagaaagagcgcgag
tccatcatgaaggagttcagatctggagccagtcgagtgctgatctccacagacgtttgg
gccagaggtctggatgttcctcaggtgtctctcatcattaactacgatcttcccaacaac
agagagctgtacatccacaggattggtcgatcgggtcgttacggcaggaagggtgtggcc
atcaactttgtgaagaacgacgacatccgtatcctgcgtgatattgagcagtactactcc
acacagatcgacgagatgcccatgaacgtggctgacctgatctga
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