Puntigrus tetrazona (Sumatra barb): 122355366
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Entry
122355366 CDS
T08985
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03420
Nucleotide excision repair
ptet03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122355366 (ercc4)
03460 Fanconi anemia pathway
122355366 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptet03032
]
122355366 (ercc4)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122355366 (ercc4)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
122355366 (ercc4)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
122355366 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
122355366
NCBI-ProteinID:
XP_043109482
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Position
12:complement(8325243..8331539)
Genome browser
AA seq
897 aa
AA seq
DB search
MASPLLEYETEMFLSLFSSDGLLVTAEGLGVDRILLHFMRVYSEEGSLVLLLNTTTPEQE
YFTEQLRAEGVSHLPQTVTSDVHNNERYNVYTKGGVLFVTSRILVVDFLTDRIPANLITG
ILVYRAHKIIESCQEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCKVERVMRNLFVKKL
FLWPRFQASVNTTLDKHKPDVVELHVSLTPAMRAIQSSILDIMNACLKELKRYNPTLEAE
DLSLENSLGTSFEKTIRHYLDPLWHQLGSRTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRTSQKSFGSNSGWLFLDSSTSMFVNARSRVYCMRESKKKLKVGENDQKRSALGPPIR
ELVLEKNPKWEALTEVLQEIEKENSSSEREPGRVLICASDDRTCAQLKEYIQKGAEHLLN
RLYSRTIGKEDPQPDLLKLDKGWSKKASAKSKGKNGRPKKKQTASKKPTKNDRPSRVSQM
ERQEDGAEKDLIGNSGDEGSLAEEEEEEEEEEILLDISSDDYYGILKEPLTVIHPLKGCS
DPYSLTRVLHEVDPMFVVLYDAELSFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQRYLT
VLSKEKQAFEYLIREKASMVVPEEREGREDTNLDLVRSQEPASAATNTRKAGGREDVKEP
QRIIVDMREFRSELPSLLHQRGLDIEPITLEVGDYILTSEICVERKSVSDLIGSLQSGRL
YTQCLSMTRFYRRPVLLIEFDPAKPFSLVARSDFRQEISASDVTSKLTLLTLHFPRLRLL
WCPSPYVTAELFQELKRGRPEPDAATAQAVTAESETVTESADLYNPGPHDFLLRMPGVNV
KNFKSLVKHASCLADLLTFSQEKLSEILASGSNARQLFEFLHNPMDVVPVQKNKQTL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcccgctgctggagtacgagacggagatgtttctgagtttgttcagctcggac
ggcttgctggtcacagccgaggggctcggggtcgaccgtattctcttacacttcatgaga
gtctattcggaggagggcagtctggtgctcctgttaaacacgaccactcctgaacaggag
tattttacagagcagctccgcgctgaaggagtaagccatcttccccagactgtgaccagc
gatgtgcataataatgaaagatataacgtgtacactaaaggaggagttctctttgtgacc
agccgcatcctagtggtggacttcctcaccgaccgaattcctgctaacctcataacagga
atcctggtgtatcgtgcgcataagatcattgagtcttgtcaggaggctttcattctgaga
ctttatcggcagaaaaacaagaccgggttcatcaaggcctttacggacaaggccacgtcc
ttctcttctggcttctgtaaagtcgagcgtgtcatgagaaacctgtttgtgaagaagctc
tttctttggccaagatttcaagcatcagtgaacacaacgctggacaaacacaagccggat
gtggtggagctccatgtgtctctgactccagcgatgagagccattcagagctctatcctg
gacatcatgaacgcctgcttgaaagagctgaagcgctacaatcccactctggaagcagaa
gacctctctctggagaacagcctgggcacttcctttgaaaaaacaattcgccattatctt
gacccattgtggcatcagctggggtccaggaccaaatctctcgttcaggacctaaagatt
ttaagaacccttcttctctacctcacgcagtacgactgtgtcaccttcctcaatctgcta
gagtctttaagaaccagccagaaaagcttcggtagcaattcaggttggttattcttggac
tcgagcacttcaatgtttgtaaatgctcgcagccgcgtgtattgcatgcgagagtcaaag
aagaaactaaaagttggagagaacgaccagaaacgaagtgctctaggccctccgataaga
gagctcgtgcttgagaaaaatccaaagtgggaagcgttaacagaggtgctacaagagatt
gagaaagaaaacagcagctccgagcgtgaaccaggccgtgtgttgatttgcgccagtgat
gacagaacatgtgctcagctgaaggaatatatccaaaaaggagcagagcacctactgaat
cgcctttattcacgcaccattggaaaagaagatcctcagcctgatttactgaagcttgac
aaaggctggagcaagaaggcctccgctaagagcaaagggaaaaacgggcggccaaaaaaa
aaacaaaccgcctcaaagaaaccaacaaagaatgacagaccttcaagagtctctcagatg
gagaggcaggaagacggagctgaaaaggacctaattggaaacagtggagatgaaggaagt
ttggctgaagaggaggaggaggaggaagaagaagagattcttcttgatatttcttccgat
gactactacggaatccttaaagagccgttgactgtcattcaccctttgaagggatgcagc
gacccctacagtttgacgcgggtgttgcacgaagtcgaccccatgtttgttgttttgtat
gatgcagaactcagttttgtgcggcaacttgagatttataaagccagcaggccaggaaaa
cctctccgtgtatattttcttatatatggaggctcgacagaagaacagaggtatcttaca
gtcttgagcaaggaaaaacaagcatttgagtacctcataagggaaaaggccagcatggtc
gttccagaagagagagagggtagggaagacaccaacctagatcttgtccgcagtcaggaa
cctgccagtgccgccaccaacacccgcaaagcagggggccgtgaagatgttaaagagcct
cagcgaatcatagttgacatgcgggagttccgcagtgagcttccttccctcctgcatcaa
cggggtctcgacattgagcccatcaccttagaggtcggcgactacatattgacttcagag
atctgcgtggagcgcaaaagcgtcagcgatctcattgggtcactacaaagcgggcgtctc
tacacacagtgcctctctatgactcgattctatcgccgtccggtgctgcttatcgagttt
gaccccgccaagcctttctccctcgtggcccgcagtgattttcgtcaggagatttctgcc
agcgacgtcacatctaaactgaccctcctcaccctccatttcccccgcctgaggctgctc
tggtgcccgtctccctacgtgacggcagagctgtttcaggagctcaaacgcggccgcccg
gagcccgacgccgccacagctcaggccgttactgccgaatcagagacggtgacggagtca
gcagacctgtacaaccccggacctcacgacttcttgctccgcatgcctggagtcaatgtg
aaaaacttcaagagccttgtaaaacacgcttcctgtctggccgatcttctaacatttagt
caggaaaagctcagtgagatcttggccagtggtagcaatgccaggcagcttttcgaattc
ctacacaatcctatggatgtggtgcctgttcagaaaaacaagcagacattgtaa
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