Puntigrus tetrazona (Sumatra barb): 122355743
Help
Entry
122355743 CDS
T08985
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122355743 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
122355743 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122355743 (lsm5)
03041 Spliceosome [BR:
ptet03041
]
122355743 (lsm5)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122355743 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
122355743 (lsm5)
Spliceosome [BR:
ptet03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122355743 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122355743
NCBI-ProteinID:
XP_043110243
LinkDB
All DBs
Position
12:complement(5423503..5425993)
Genome browser
AA seq
91 aa
AA seq
DB search
MAAVAATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtcgcggcaacgaatccctcgcagcttttacctctcgagctggtggataaa
tgcatcggctcacggattcacatcgtcatgaaaaatgataaagagattgtgggaaccctg
ctcggatttgatgactttgtcaacatggttcttgaggatgtgacagagtttgaaatcact
ccagaaggaagaagaatcacaaagctggatcagattttactcaatggcaataacatcaca
atgttgattcctggaggagaaggaccagaagtttga
DBGET
integrated database retrieval system
