Puntigrus tetrazona (Sumatra barb): 122355874
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Entry
122355874 CDS
T08985
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122355874 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122355874 (msh2)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122355874 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
122355874
NCBI-ProteinID:
XP_043110405
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Position
12:complement(10931862..10938013)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPETTVRVFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGSKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNTSKSSKEHDWQISYKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGTDGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLQAVIKYLELLSDEANFGSFKMTTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKTCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPSLVLA
LERYSGKHQVLLHAAFISPLNDLVSDFSKYQEMIETTLDMNQVEHHEFLVKPSFDPILSE
LRENMDRLEKAMQTALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSFNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYVRPKILDKGSGRLIVKAARHPCVEAQDDVAFIPNDVSFRRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVHNLHVTALTTHSTLTMLYKVKNGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISKAGDEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPVEGMSDE
AVKEELRKLKAEVIGQNNSFVNEIVSRSAKVKITSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagtgcgtctgaacacggatttctg
aatttttatttttctatgcccgagaaacccgaaaccaccgtgagagtatttgatcgaaac
gattactatacggtgcacggaaaagatgcggtttttgcagccaaagaggttttcaagacg
aatggagtcatcaaaaacctgggcacaggcagtaagaggttggagagtgtggtcctcagt
aagatgaactttgagtcttttgtgagggacctgctgctggtcaggcagtaccgggttgag
gtttacaagaacactagcaagagcagcaaagaacatgactggcagatatcttacaaggcg
tctccaggaaacctgacccagtttgaggagattttatttggcagtggaggaggtcccggg
gagggagctgccggtgtcgtcggggttcgtcttggcacagggaccgatggacagcgggtc
gtcggtgttggctatgtcgacagcaccctcaggaaactaggcgtatgtgaattcccggac
aacgaccagttttccaatctggaggctcttctcgtgcagatcggacccaaagagtgcgtg
ctccctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcgtggt
ggcattctgctcacagacaggaagaaatcagagttcacaaccaaagacattgtgcaggat
ctgaatcggctactaaaggcccgtaagggagagactgtgtccagtgctgcgcttccagag
atggagaaacagattgcaatgtcttgcttacaagctgtcatcaaatacctggagcttctt
tcagatgaggccaattttggttccttcaagatgaccacctttgacctgaaccagtacatg
cgactggataatgctgctgtgcaggctctgaatctctttcagggatcttctgatgatgct
acaggcacacactctctggcgggacttttaaacaagtgtcgtaccccacaaggacagcgg
ttggtcaatcagtggatcaaacagcctctcatcgacaaaaacaagatcgaagaaagactg
gatcttgtggagacttttgtggaagactctgagttgaggaagacttgtcaagaggacctt
ctccgccgctttccagacctgaaccgaatggcaaagaagttccagcgtcaaagctctaat
ttacaagactgttaccgagtctatcaggctgtggggcaactgccgagtctggtgctggcc
ttggaaagatacagtgggaaacatcaggtcctcctgcatgcagcattcatctctcccctc
aacgacctcgtctctgacttctccaaatatcaggagatgattgaaactacactggatatg
aaccaggttgaacatcacgagttcctggtgaaaccctcgtttgatcccatcttgagtgag
ctgagggagaacatggatcgtttggagaaagccatgcagacggccttgaacagtgcggct
cgtgaacttgggctggaagcagctaagaccgtgaagctggaatccaacgcacagatcggg
tactttttccgagtgacgtgcaaagaagagaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaatggagtgcgattcactaacagtaagctgagttcttttaat
gaagagtacactaaaagcagagaagagtacgaagaggctcagaatgccattgtcaaagag
atcatcagcatagctgcaggctatgtggatccggttcagactctgaatgaggtgatagct
cagctggatgcagtggtgagcttcgctgtagtgtcccacgctgctccggtgccttacgtg
aggcctaaaatattagacaaaggctcagggagactcattgtaaaggcggcaagacatccc
tgtgttgaagctcaagacgatgtggctttcattcccaacgatgtctccttcagaaggggc
gaggagatgtttcatatcatcacgggtccaaatatgggcggtaaatctacatacattcgt
caagtgggtgtgatcgtgctgatggcacagatcggctgttttgtgccatgtgatgaggca
gaattgagcgtggtggactgcgtgctcgctcgagtgggtgcaggggacagccagatcaaa
ggagtgtccacctttatggctgagatgctggagactgctgctattcttcgatcagccaca
gaggattctcttattatcattgatgaactgggcagaggcacatctacatacgatggcttt
ggtctggcctgggctatctctgagtatatcgccacccgcctcaagtccttctgcctgttt
gccactcacttccacgagctgacagcactcgcacagcaggttcccactgtccataacctg
catgtcactgccctgaccacacacagcactctcaccatgctctacaaagtgaaaaacggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaaacatgtg
attgctaatgcaagggagaaggctttagagctcgaggagtttcaagatatctccaaagct
ggggatgaagcgggaccggaagccaagaaacgctgcctggagaaacaggagggggagaag
atcattgaggctttcctggctaaggttaaatcaatgcccgttgaaggcatgtctgatgag
gctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcggacaaaacaatagcttc
gtcaatgagatagtgtcacgttctgccaaagtcaaaataacttcagcctga
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