Puntigrus tetrazona (Sumatra barb): 122356339
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Entry
122356339 CDS
T08985
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122356339 (col13a1)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122356339 (col13a1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122356339
NCBI-ProteinID:
XP_043110852
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Position
13:complement(4690882..4779732)
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AA seq
841 aa
AA seq
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MEDMKLRVSPQSGLERTCVQHPCQKRLVTNWKDACAVCVCLISFGVCVLLYLRTSDLQSR
VLSLEKDRDPRTSSWISLEQVEPVLWSRLDQILEEKLAARLPKIREARDAPHSCICPPGP
PGLRGKKGRDGASGPPGPPGRAGFPGDKGSMGIPGRMGLKGNLGEKGAPGEPGLSIIGPR
GPPGQPGTRGFPGFPGPIGLDGKPGQNGPKGDMGPRGPKGVPGEPGPKGEKGVCGDYTHR
KRRIVNACAGGQATQMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGPPGTPGL
TGVSGPPGKPGEPGKPGKDPRMLPGLKGEPGVPGQKGDRGEAGPSGPEGPKGIKGDEGTK
GDSGVDGHRGEKGEKGELGMPGMPGKQGLKGEPGFPGVPGRKGQAGVSGIPGKRGYKGEK
GEPSAAGAGIKGEPGSPGQHGQAGPKGEKGDQGIKGDPGQEGPSGPRGPPGPTGEPGKSL
INNNENDIRNVHLMGPPGLPGPPGLPGTPGLKGDVGLPGPPGLDGEKGPRGKPGELGPIG
PPGPEGPRGEGGAIGLSGPKGDRGDMGPSGSPGLDGPTGEKGVSGPPGHIGLPGLMGQKG
EPGEKGDKAELVYGPAGPPGPVGPLGPPGLPGPKGEPGIGLRGEKGSSGQKGEKGDRGHL
GLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGEMGEKGDMGVAGPIGPQGIPGLVGPPGLK
GNRVFLSPFPPPAPRPVSVALFAESGRVALSVPFSLPGLLLLLLHPNVVAWVNTPPLPHL
PLLLISFTDLPTNLHSLSPKYSNAQSSYCSTKASSGSLLKRHITKRCGKRHYVSAELIST
S
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatgaaattgcgagtatcacctcagtccggtctggagaggacctgcgtccag
catccctgccaaaagcgccttgtgacaaactggaaggacgcgtgtgctgtctgcgtgtgt
ttgatctcgtttggagtttgcgtgttgctctacctgaggacgtcggacctacagtccagg
gtgctcagtttggaaaaggacagagacccccgcacctccagctggatctctctggaacag
gtggagcccgtcctgtggagtcgactggatcagatattagaggagaaattagcagcacgt
ctgccgaagatccgtgaggctcgggatgctcctcacagctgcatctgtccaccaggacct
cctggtttgaggggaaagaaaggccgtgatggggcttcaggtcctcctggtccacctgga
cgagcaggctttccgggagacaaaggatcaatgggcattcctggaagaatgggcttaaag
ggaaacctgggggagaagggagcgccaggagagccaggtctgtctatcattggcccacga
ggacctcctggacaacccggaactagaggatttccaggctttccgggccccattggcttg
gacgggaaacctggacagaatggtccaaagggtgatatgggtcctcgtggtcctaaagga
gtaccaggtgaacctggtccaaaaggagagaagggtgtatgtggcgactacactcaccgg
aaacgccgtattgtcaacgcctgtgctggaggacaggccacacagatgttgcccatcacc
gtccgcaacatgccctcaataagccctctaatcctaaagcgcctcaagcagggcgagcct
ggggctcagggaccaccgggacctcctggccccccagggcctccagggactcctggccta
actggtgttagtgggcccccaggtaaacccggagaacctggaaaacctggaaaagaccca
agaatgctaccgggcctgaagggtgaacccggtgtacctggacaaaagggtgatcgaggt
gaagctggcccaagtggacctgaaggccccaagggaattaaaggagatgaaggaacgaag
ggtgattctggggtggatgggcatcgaggagagaagggggagaagggtgagctagggatg
cctggaatgcctgggaaacaaggattgaagggagagcctggtttcccaggtgtccctgga
cgaaagggtcaggcaggtgtttctggtatccctggaaaacggggctacaagggtgagaaa
ggcgagcctagtgctgcaggagctggcatcaaaggagaaccaggttccccgggacagcac
ggacaagccggacccaagggtgagaaaggtgatcaaggcataaagggtgatcctggccag
gaaggcccatctggaccaaggggcccaccaggtccaactggggagccagggaaatcttta
atcaacaacaatgaaaatgatatacgcaacgtgcatctaatgggccctcctggtttgcct
ggacctcctgggcttcccgggacccccggtttgaagggtgatgttggacttccaggtccc
cctggtcttgatggggaaaagggtccgagaggaaagccaggagaactgggacccatcggc
cctcctggacctgagggacctcggggagaaggaggagccataggcttgtctgggccaaaa
ggagacaggggtgacatgggcccctcagggtcacctggtttagatggccctactggagaa
aaaggggtttcagggccccctggccatattggattgccaggcttaatgggtcagaaaggt
gaacctggggagaaaggagataaagcagaactggtctatgggcctgctggacctccaggg
ccagttgggccattgggacctccaggtttgccaggaccaaagggagaaccaggaataggg
cttagaggagagaagggatcgtctggacagaaaggagagaaaggagacaggggccatctc
ggactccctggggctcatggtttagacggcaggcctggtccagtgggtctgataggacca
gctggagtgcctgggcctgcaggaccaaaaggagaaatgggggaaaagggtgatatggga
gttgctggaccaattgggcctcaaggcatccctggtttagtaggaccaccgggattaaaa
ggaaaccgggtcttcctatccccttttcctccccccgcacccaggcctgtgtccgtggct
ctttttgctgagtcgggccgggtcgccctctctgtccccttctcactccctggcctcctc
ctgctcctcctgcatcctaatgttgtagcctgggttaatactcctcctcttcctcacctc
ccacttttgctcatatccttcactgacctccctaccaacctgcattcactttctcccaag
tattctaatgcacagagttcttattgttccacgaaagcctcatctggatctcttttgaaa
aggcacataaccaagcgatgtgggaaaaggcattatgtcagtgcggagctcatttcgaca
tcctga
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