Puntigrus tetrazona (Sumatra barb): 122356346
Help
Entry
122356346 CDS
T08985
Symbol
msh6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122356346 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122356346 (msh6)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122356346 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
122356346
NCBI-ProteinID:
XP_043110899
LinkDB
All DBs
Position
13:19494929..19505429
Genome browser
AA seq
1446 aa
AA seq
DB search
MKIKADRVGHVGSCKRIHRTSYWSAVSWRQTVLLFPFRAPAAFSRELLAPRFYVCWDATC
KSLSRVIKRYTAQHPSGDMAKQSSLFNFFTKSPPLAAKAKSNPSPAEADAASRSNTSPKE
EAKVNGKKTPSKPVKAQAKAGHAKLFGEKAVNAKESREPSSIFSAGTLVWAKMEGHPWWP
CMVVPQPLTGQQMRGRGRDQRLHVHFFDEPPTRGWVNTKYIREYQGSDSADARSGGMFFS
GKPVIRKAMELADVAMKDSPEQRLKMSVCADPSGDEEEDEEDMEVDKSTLSDAEMSEEEV
KEKAKPSRRSSRAAAEKGQKPKRRRIVVASDSNDSGEEFNPDQAGGSSDEDDEEGVSSGA
EEEESEPGSEPDSPVKQVKRKRPLEKPAKPKSKPDTPKRAPAALSSVASDTKSRLSAFSA
PDNFESQSSSANGTDGGPTVWDHEKLEWLQDGKRKDAQRKRQSDENYDPTTLYVPDDFLN
RTTPGMRRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELGLTFMKGSWAHSGFPEI
GFGRFSDVLVQKGYKVARVEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTY
SVLDGAPSETQSKYLLSIKEKSEEDSAGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLR
TLVAHYSPAQVLYEKGNPSAETLKIFKAILSSTLQEGLNAGSQFWDAQKTLKVFAEEDYF
SESNADNEKASVLPLTLKAMTSECDALSLTPKAGYELALSALGGCMFYLKKCLVDKELFS
MGNFEEYVPVDVEMEQAGGASSFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERL
DTCCTPFGKRLLKQWLCAPLCNSSSIGDRLDAVEDLMGAPSQATEVTDLLKKLPDLERLL
SKIHSMGTPLKGQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMREIVSVMEPVAEGF
KSKLLRHVMLVKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITPKVGFDPEYDQALN
GIKDSEKGLQEYLDRQKKRLGCKNLSYWGTGRNRYQLEVPDSLSDRSLPEEYEVRSTKKG
WKRYSTKEIERLFSELQSWEDKRDAALKDCMRRLFYNFDKNCKDWQTAVECMAVLDVLLS
MSRYSQSGDGPMARPEIVLPGDGSQSRPFLDLRGSRHPCVTKTFFXDDFIPNDIFIGCSG
SEDDDDDGGKALAPCVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLSLTPVDRVF
TRLGASDRIMSGESTFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVNE
LSEKIRCRTLFSTHYHSLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIGGAC
PKSYGFNAARLANIPEEVIQCGHKKAREFERSTGSLRIFKKLCSFAENPSADREQLTTLL
QKISGL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaaagcggatcgtgtcggccacgtgggtagttgtaaaaggatacacagaact
tcctattggtccgcagtgtcgtggcgtcaaacggtcctcctcttccctttccgcgcgcca
gcagcgttttcccgcgaactcttagctccgcggttctatgtctgctgggatgcgacgtgc
aaatcgctttctcgagtgattaaacgttacaccgcgcagcatccttcgggagacatggcg
aagcaaagttctctttttaacttcttcaccaagtcgcctcccctcgcggcgaaggccaaa
tccaacccgtctccagcggaggcggatgcggcgagcagatccaacacctcacccaaagaa
gaagccaaagtcaacggcaagaaaacgccatcaaaacccgtcaaagctcaagctaaagcc
ggacacgcgaaactattcggagagaaagcggtcaatgcaaaagagagcagagaaccgtca
tccatatttagtgctggcactctggtttgggccaagatggaaggacatccctggtggccc
tgtatggttgttcctcagcctctcacaggacagcagatgagaggccgtggtcgggaccag
agactccacgttcacttctttgacgaaccaccaacccgaggctgggttaacaccaaatac
ataagagagtatcaaggctctgatagtgcagatgccagatcaggtggcatgttcttcagc
ggtaagcctgtgatccgtaaagcgatggagctggcagatgttgcgatgaaggacagccct
gagcagagactgaagatgtccgtgtgcgcggatccttcaggtgacgaagaggaggatgag
gaggatatggaggttgataaatcaactttgtcggatgcagaaatgtccgaggaggaggtt
aaagaaaaggcgaagcccagtcgacgttcatctcgtgccgcggctgaaaaaggtcaaaaa
ccgaagcggcgccgaatcgtggtggcgtctgacagcaatgactccggcgaagagtttaat
cctgatcaggcaggaggaagcagtgacgaggatgacgaggagggagtgagtagcggtgct
gaggaagaagaaagcgagcctgggtcggaaccagacagccctgtgaaacaggtgaagcgc
aaacgtcctctagaaaagcctgctaagccaaagagcaaaccagacaccccgaaacgagca
cctgcagctctttcatcagtggcgtcggacaccaaatctcgactttctgctttctccgca
ccggacaacttcgaaagtcagagcagcagcgcaaacgggacggatggaggaccaactgtg
tgggaccacgagaagctcgagtggctgcaagacggcaagagaaaggatgcacagcgcaaa
cgtcagtctgacgaaaactacgaccccacgactctatacgttcccgatgatttccttaac
aggacgacgcctggaatgcgccgttggtggcagctgaagtctgagatgtttgacaccgtc
ctgttctacaaagtcggtaagttctacgagctctaccacatggatgctgtgattggcgtc
aacgaactcggcctcaccttcatgaagggttcttgggcccattccggcttccccgaaatc
ggtttcggacgcttctcagacgtgcttgtgcaaaagggctacaaagtggctcgtgtggaa
cagaccgagacccctgaaatgatggaagcgcgttgtaagacgttagcgcgtccgactaaa
ttcgaccgcgtcgtcaagcgcgaggtttgccggatcattacgcgagggactcagacatac
agcgtgctcgacggtgccccttctgaaactcagagcaagtatctgttgagcattaaagag
aagagcgaggaggacagtgcgggacatggacacatctacggggtgtgtttcattgacacc
tcggtgggccgctttcatatcggccaattccaggatgaccgccattgttcccgtttgcgt
actcttgttgcgcattattctccagctcaggtgctttacgagaagggcaacccgtcagct
gagacgctgaaaatctttaaagccatcttgtcttcaactttacaagaaggcctcaatgct
ggttcgcagttttgggatgcgcagaagaccctcaaggtctttgcagaggaagactacttc
agcgaaagcaacgcagacaatgaaaaggcatcggtgttgcctttgactctcaaagcaatg
acgtccgaatgcgatgctttaagtctcactccaaaagcgggctacgaacttgctctttcc
gcacttggtggatgcatgttctacttgaagaaatgtctagtggataaggagcttttttca
atgggcaacttcgaggagtatgttcctgtcgacgtggagatggagcaagctggaggagcg
tcaagttttttcgcccagactcgtcaacgaatggttttggatggagtgacgctagctaac
cttgagatccttcagaacagctcaactggaggtcctgagggaaccctacttgagcgactg
gacacgtgttgcacccccttcggtaaacgcttgctaaagcaatggctctgcgcccctctt
tgcaattcgtcctccatcggggatcgcttggatgccgtggaggacctgatgggcgcgccg
tcccaagcaaccgaagtcacagacctgctaaagaagcttccggatctggaaagactgctt
agcaagatccacagcatgggcactcctttgaaagggcaggaccatccagactccagagcc
attctctacgaagaagtcgtctacagcaaacgcaagatcgccgacttcctcgcagccctt
gagggctttaaagttatgagagaaatcgtgtcggtcatggagcctgtcgcagaaggcttc
aaatctaaactgctgcgtcacgtgatgctcgtcaagactgaaaacgaagatgggcttttc
ccagacctttctcctgagctcaaacgttgggatacggctttcgaccatcagaaagctcgc
accacaggcgtcatcacgccaaaggtcggcttcgatccagagtatgaccaagctttaaat
gggataaaagactctgagaaaggcctgcaggaatacctggaccgacagaagaagagactg
ggctgtaagaatctgtcttattggggaacgggaaggaaccgctaccagctcgaagttcca
gacagcctttccgatagaagcttgccggaggagtatgaggtgaggtccactaaaaaaggc
tggaaacggtactcgactaaggagattgaacggctgttttcagagctacagagctgggaa
gacaaacgagacgcagcgctgaaggactgcatgagaagactcttctataatttcgacaag
aattgcaaagactggcagacagcggttgaatgcatggcagtgcttgatgtgctgctgagc
atgtcccggtacagtcagagcggcgacgggcccatggcgagaccagagattgttctcccg
ggggacgggtctcagtcacgtcctttcctggatctccgagggtcccgtcacccttgtgtc
accaagaccttcttcngggatgacttcatccccaatgacatcttcatcggctgctccggt
agcgaagatgatgatgatgatggtggtaaagcacttgccccatgtgttttggtcaccgga
ccgaacatgggaggcaagtccaccctaatgagacagtgtggtctggtggtgattttggct
cagctgggctgttatgtacctgccgagagtctgtccctcactcctgtggaccgagtcttc
actcgtctcggcgcctctgatcgtatcatgtcaggtgaaagcacgttcttcgtggagctg
agcgagacggccagtatcctgctgcacgccaccaaccactccctcgtcctgctggatgaa
ctgggcagaggcacggccacgtacgacggcacggctatcgcgagcgcggtggtgaacgag
ctgtcggagaagatccgctgccggaccctgttctccactcattaccactcactggtggag
gaccacgtccaggaccccgccgtcaggctcggacacatggcctgtatggtggagaacgag
tgcgaggaccccagtcaggagaccatcaccttcctctacaagttcatcggcggcgcgtgt
cccaagagttacggcttcaacgcggctcgcctggcgaacatcccggaggaagtgatccag
tgcggtcataagaaggcccgcgagttcgagaggagcaccggatctctccggatattcaag
aagctgtgctcgtttgctgaaaaccccagcgctgaccgcgagcagctcacgactttgctt
cagaagatcagcggcctgtga
DBGET
integrated database retrieval system
