Puntigrus tetrazona (Sumatra barb): 122356449
Help
Entry
122356449 CDS
T08985
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptet03009
]
122356449 (ddx21)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122356449 (ddx21)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122356449 (ddx21)
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
Pre-60S particles
Helicases
122356449 (ddx21)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122356449 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
Rdx
DUF612
Motif
Other DBs
NCBI-GeneID:
122356449
NCBI-ProteinID:
XP_043111112
LinkDB
All DBs
Position
13:complement(1864531..1871277)
Genome browser
AA seq
719 aa
AA seq
DB search
MPISPTTSKMPTKILPEVEQNTSMEDVESGLQLLKKKKKKMKEKAEAEECVSPAPKKRKA
EKMSTEITDMNGNTDTHQLKLKKRKKAHVEEVMGSGETPNTRGTAVVDTPAPSSEDSDSD
REKETPEQKEGAFSNFRISQNTIKLLQARGVSYLFDIQVKTFNSVYDGKDVVAQARTGTG
KTFSFAVPLVEKLQSGAEDRRKGRAPKVLVLAPTRELAIQVAKDFKDITRKLFVTCFYGG
SSYNPQCEAIRNGIDILVGTPGRIQDHLQNNKLDLSQVKHVVLDEVDQMLDMGFAEQVEE
ILSMSYQRDAEEKPQTLLFSATCPAWVYEVAKKYMRPQCFHVDLIGKKTQKAATTVEHLA
ITCHWSQRASVIGDVIQVYSGSHGRTIVFCETKKDATELSLNSSIKQSAQALHGDIPQKQ
REVTLKGFRSGAFEVLVATNVAARGLDIPEVDLVIQCSPPNDVESYIHRSGRTGRAGRTG
ICICFYQRKEEGQLKFVEQKAGITFKRVGVPTAKDIIQSSSKDAMRFLDSVPEVAVGYFR
EAARELILQRGAEEALAAALAHISGATNLEQRSLISSEAGFTTLVMNCSQEMHSISYAWR
SLKEQLGEGIDEHIKRMTFLKDKMGVCFDVPVNKVKELQDRWKDCRRWQLSVATELPEME
QNDRYCGDFGGRGGGRGRRSSGFRGNGSGGRRGGGGGRGGGGGGGGGGNHKRFSSAFHY
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcccatctctcccacaacatctaaaatgcccactaagatcctgcctgaagtcgagcag
aacacatcaatggaggacgtggagagcggcctgcagctgctgaagaaaaagaaaaagaaa
atgaaagaaaaggctgaggcagaagagtgtgtttccccggctcctaagaagaggaaggct
gagaagatgtccaccgagatcacggacatgaacgggaacacggacacacaccagctcaag
ctgaagaagagaaagaaggcacacgtggaggaggtgatgggcagcggagagactcctaac
acccgagggacggctgtagtagacacccctgctccgtccagcgaggactcggacagcgac
cgggagaaggaaactccggagcagaaagaaggagccttctccaacttccggatctcccag
aacaccatcaaactgctgcaggcccgtggcgtttcgtatctctttgacatccaagtgaag
acctttaactctgtgtacgacgggaaggatgtggtggctcaggccaggaccggcacgggg
aagaccttctcgtttgcggttcctctggtggagaagcttcagtccggagctgaggaccgc
aggaaaggccgcgccccaaaggtgctggtcctggctccgactcgagagctggccatccag
gtggccaaagacttcaaagacatcaccaggaagctgtttgtcacgtgcttctacggagga
agctcatacaacccgcaatgcgaggcaatccgcaatggcattgacatactggtgggaacg
ccgggtcgaatccaagaccacctgcagaataacaagctggacctgtctcaggtgaagcac
gtggtgctggacgaggtggaccagatgctggacatgggcttcgccgagcaggtggaggag
atcctgtccatgtcctatcaaagagatgcggaggagaaaccacagacgctgctcttctcg
gccacctgtcccgcctgggtttacgaggtggccaagaaatacatgcggcctcagtgcttc
catgtggatctcatcgggaagaagacccagaaagctgccaccacagtcgagcacctggcc
atcacgtgtcactggtctcagcgggcgtccgtcatcggtgatgtcatccaggtgtacagc
ggcagtcacggccggaccatcgtcttctgtgagaccaagaaagacgccacggagctctcg
ctgaactcgtccatcaaacagagcgctcaggcgctgcacggagacattccccagaagcag
agagaggtcacgctcaagggcttcaggagcggcgccttcgaggtgttggtggccactaac
gtggcggcccgaggcctggacatccctgaggtggacctggtcattcagtgctctcctcca
aacgatgtggaatcgtacatccaccgatccggacggactggcagagccggaagaacaggc
atctgcatctgtttttaccagcgtaaagaggagggccagctcaagtttgtggagcagaaa
gcgggaatcaccttcaaacgggtcggggtcccaacagccaaagacatcatccagtcgtcc
agtaaagacgccatgaggttcctggactcggtgccggaggtggccgtggggtatttccgt
gaggcagcgcgggagctgatcctccagcgtggggccgaggaggcgctggccgcggccctc
gctcacatctcaggggccaccaacctagagcagaggtccctcatcagctcagaagccggg
tttaccaccttggtaatgaactgctctcaagaaatgcacagcatcagttacgcctggcgc
agcctgaaggagcagctcggggagggcatcgatgagcacatcaaacgcatgaccttcctc
aaggacaagatgggtgtgtgtttcgacgtcccagtcaacaaagtgaaagagttgcaggat
cggtggaaggactgccggcgctggcagctgagcgtggccacagagctccccgagatggag
cagaatgatcgctactgtggagacttcgggggccgcggcgggggacgaggacgacgctcc
tccggcttcagaggaaacggctccggcggcagaagaggaggaggaggaggaagaggaggt
ggtggtggaggaggaggaggaggcaatcataaacgcttcagctcagccttccattactaa
DBGET
integrated database retrieval system
