Puntigrus tetrazona (Sumatra barb): 122356524
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Entry
122356524 CDS
T08985
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122356524 (rc3h1b)
04121 Ubiquitin system [BR:
ptet04121
]
122356524 (rc3h1b)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122356524 (rc3h1b)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122356524 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
Kinesin_assoc
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
122356524
NCBI-ProteinID:
XP_043111239
LinkDB
All DBs
Position
2:1544773..1559774
Genome browser
AA seq
1105 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPDEVVPLEPGRKASTL
TNGGPLPQLIPRGTDPSSYDLLLKPKMDGTSLSAPGSPPDSLDKSSLALTPHPVPHPRAE
HLPMPKQVPVMPRGAPQMYPQQQPELFYPEPARPPPSGSQYDAQYPTGNPYPYQPPQYVP
PRYIRNPPPPGEPHYPEPYPGYGPDRQYPSHHSGPPFSAHTYAQPSHYSRRHGHYPAPPP
PFAPTRDDLVRMSPVPLDVPPAAMPPPPAGPAGSLYHSQEPSSRDRYPPDGYYTAGPHPS
QMRSHIGQDPYSRAQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPNDYPR
EYLEDGSKAFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNAEGKVLREP
PLDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAIASSQASGSKHM
TMTADYPYGNHSGWGGASYPQHQSINSQGHFSERLPVSGPDREQLKIELQQVNQQISQQT
RGMEAASNSMLLQREACALASQPAAGVKWSSGGTVSSEQLSMELDHVELEIKKRTREIAM
ENQVAHEYKLKATENGQTDRKAQLEELSLALGEVSNGSSGMKPASSMGGSMLSLTNKTSS
LTLCSADQAASSSDLQKNGVVHSCS
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccagacg
ttcgaggagacggtgcggcggcccatcagtctgggttgcggccacaccgtttgcaagatg
tgcctcaacaagctgcaccgcaaggcctgtccctttgaccagacggccatcaatactgac
atcgagcagctgcccgtcaactcggccctgctacagctggtcgggggtcaggtgcccaaa
cagcaacctgtggcgctcattacgtgtccagaggacactaagcattacgatgaggcacgg
cagtgcgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttgagtaatgctgctcagagcatgctgagccgcccgatgcagaggaagctggtgactctg
gtgcactgtcagctggttgaggaggaaggacgggtcagggccatgcgggcggcccgttct
ctgggtgaaagaactgttactgagctcattttgcagcaccaaaatccccagcagctctcc
tccaacttgtgggctgctgtcagagccagaggctgccagttcctgggacccgccatgcag
gaggaggcactaaagctggttctgttggccttggaagacggatctgctctttccaggaag
gttctggtcctttttgtggtccagagactggaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgcttcaaggtgactaagcga
gatgaggattcttcgctaatgcagttgaaagaggagtttcgcacatatgaggcacttcgg
cgggaacacgactctcagattgttcaaatcgcaatggagggaggtctccgcatcgccccc
gatcagtggtcttccctgctgtatggagatcagtctcataagtcccacatgcagtccatc
attgacaagctgcagaccccggcgtcatttgctcagagcgtgcaggagctgaccatcgca
ctgcagaggacgggtgaccctgccaatctcaaccggctgagacctcacctcgaattgctt
gctaacatcgaccccagtccagatgctcctcctcctacctgggagcagctggagaagggg
ctggtggcggtaaagacggtggtgcacggcctggtggacttcatccagaaccacagcaag
aagggtgccgacacacaacagccaccacagcacagcaaatacaagacgtacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagccagctgcaccttcgcccattctcag
gaggagctggagaagtaccgtaaaatgaacaagcgtcttgctgcaagagtgccctgcacc
cctggcctgctgcctgacgaggtggtccctctggaacctgggcggaaggcctctacgctt
accaacgggggtcctcttccccagctcatccccagaggaacagacccctcctcgtatgac
ctcctactcaagcccaagatggacggcactagcctcagtgctcctgggtcgccacccgac
tctttggataaatctagcttggccttgacaccccaccctgtgcctcaccccagggcggag
cacttacccatgcccaagcaggtgccagtcatgcccagaggtgcaccacagatgtatcca
caacagcagcccgagctcttctatccagagccagcccgacctcctccctcaggatctcag
tatgatgctcagtacccaacaggcaacccctacccataccagcccccgcagtatgtccct
ccccgttatattcgcaatccgcctcctccgggcgagccacattacccagagccctacccg
ggatacggcccagatcgccaatatccaagccatcactctggtccccctttctcagcccac
acatatgcacagccttcccattacagtcgcagacacggacactatcccgctcccccgcct
ccgtttgcaccaaccagagacgacttggtcaggatgagcccggttcctttggacgttccc
ccggctgcaatgccgcctcctccagcagggcctgcaggttctctgtaccactcccaggaa
ccgtcatctagagacagatacccaccggacgggtactacaccgctggaccgcaccccagc
caaatgaggtcccacataggacaggacccgtacagccgcgcacaacccagtctagatgac
ttgcatcgcaggcgcaaagagcttcttgtccagctagaggagagaaaggtcatctctcct
ccccccttcgctgcctccccgactctccctacacacccgttccctaatgactaccctcgg
gagtatttggaggatggctctaaagcctttggaagtcgggagccggactacgctgggcag
tattccccctggtcatgtgacaccataggatcatacattggctccaaggatgctaaacca
aaagatgtcagtagtgctgtggagatgatgaatgcagagggtaaagttctacgtgaacct
ccactggacacccagcggcgctctgcagaagccaaagatgacgatcccatcattcccttt
ggtcctctgcccactgtgtctccttttggtgccatttcacgtacctctaaaacgggttac
cagaccactgggcctgtacaggccatagcatcctcacaggcctcgggctccaaacacatg
accatgacagcagactatccgtatggaaaccacagtggatggggcggtgcgtcgtaccct
cagcaccagagcatcaactctcagggacacttcagcgagcgtctgcccgtgtctggccct
gaccgcgagcagctcaagattgagctccagcaagtcaaccaacaaatcagtcagcagacc
cgcggcatggaggctgccagtaactctatgctcctgcagagggaggcgtgtgcgctggcg
tctcagcccgcggctggagtgaagtggtcttcaggtggcactgtgtccagtgagcagctc
agcatggagcttgatcacgtagagctggagatcaagaagagaacccgtgaaattgccatg
gagaatcaggtggcccatgaatacaagctgaaggccactgagaatgggcagactgaccgt
aaagcccagctggaggaactctctttagcactgggtgaggtgtctaatggatccagtggc
atgaagccagccagtagtatgggtggatctatgctgtcactgaccaataagacgtcttcc
ctcaccctctgctctgccgaccaagcagcgagtagctcagatcttcaaaaaaatggtgtc
gttcactcttgctcttaa
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