Puntigrus tetrazona (Sumatra barb): 122357296
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Entry
122357296 CDS
T08985
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122357296 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122357296 (clp1)
Enzymes [BR:
ptet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122357296 (clp1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122357296 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
TniB
AAA_16
MMR_HSR1
CbiA
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122357296
NCBI-ProteinID:
XP_043112550
LinkDB
All DBs
Position
14:complement(13348100..13351652)
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AA seq
445 aa
AA seq
DB search
MTAEASEKSAEEGMSSSGGAGTSGTRFDLEKETELRFEVEAGERVQLELLSGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNTHAALEQMRRQAE
KDNERGPRVMVVGPTDVGKSTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSSLAEVFSQRCEVNRRASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVIVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVDDDAEVGAGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaagcctcagaaaagtcagcggaggagggcatgagctcctcgggcggcgct
gggacttcaggtacgcgcttcgatctggagaaagagacggagctgcgttttgaagtcgaa
gcaggagaacgagtccagctcgagctgttgtcgggtctggcggaggtgttcggctctgaa
ctgaaccgaaataagaagtacacttttggaccaggctctaagattgctgtgttcacatgg
caaggctgcagtgtgtctctctcgggcaagacggaggtagcttatatctccaaagataca
cccatgctgctgtatctcaacacccatgcagctctagaacagatgagacgtcaggcagag
aaagacaacgagagagggcctcgggtaatggttgtcggaccaactgatgtgggaaagtca
acagtatgtcgagtgctgctgaactacgctgtgagactggggcgaaggcctacgctggta
gagctggatgtcggccaaagcagcgtttctgtccctggaacgatgtcagctctgtgcatc
gagcgtcctgctgatgtagaagaaggcttctccgtgcaggctccgcttgtttttcacttt
ggctcgaccacaccaggaacaaacatcaaactttacaacaagctgacttccagccttgca
gaagtgttttcccagcgctgtgaggtgaaccgaagggctagtgtaggtggctgtataatc
aacacctgcggctgggtcaaaggttcaggctaccaggccctggtccactgcgcttcagct
ttccaggtggatgttgttatagtcctggaccaggagcgtctctataacgagcttaaacgt
gacctgccacattttgtacgtgtcgtccttctaccaaagtccggtggagtggtggagcgc
tcgaaggactgccgacgagagtcacgggacgaaaagatccgggaatacttctacggtttc
cgtggaacttccttttacccccatgcttttgatgtgcgcttttcagatgtgcgtatttac
aagatcggtgcaccctcaattccggactcctgtctccctctgggtatgtcccaggacgac
acgcagctcaaactcgtcccagtcagccctggcagggatttaacccaccatgtgctgagt
gtgagttcagtggacgatgatgctgaggtgggtgcgggacagagcagagggattctagag
agtcccgtttgtggcttcatagttgtgacagcagtggacacacaagcccaggtgatgacg
gtactctcaccagcgcccaggcccctgccgcgacacactctgcttatcatggatattcgt
ttcatcgaccttaaataa
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