Puntigrus tetrazona (Sumatra barb): 122357817
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Entry
122357817 CDS
T08985
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122357817 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ptet01009
]
122357817 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122357817 (pcdh1b)
Protein phosphatases and associated proteins [BR:
ptet01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122357817 (pcdh1b)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122357817 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_4
Cadherin_CELSR2_9th
DUF7171
PepSY
He_PIG
Motif
Other DBs
NCBI-GeneID:
122357817
NCBI-ProteinID:
XP_043113342
LinkDB
All DBs
Position
14:complement(25442905..25587547)
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AA seq
1212 aa
AA seq
DB search
MMCQSANAMWSRWSAMLVWIFLLLCCSANVVSTIIYQVTEEQPPNTLIGSLASDQGLPDT
GHLYKLEVGAPYLRVDGKTGDIYTTETPIDRETLKDCRNLFEGDPCFLEFEVSITDLMKG
TGPRLIEGRIEILDENDNTPQFSSPVLTLSIPENTHVGALFAIPVATDKDSGSNGIADYA
LSTGPEAANLFSLQVAQDSDEKLPQLIVLGNLDREQRDSYDLNIKVVDGGSPPRQSSALL
RITITDANDNVPKFEKLHYEGELPENSPVGHSVLQVKANDSDMGPNGEVTYSLHQASPIV
QRLLTIDRNTGIIFVKGSVDREDISMLKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPL
IRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDHDEGENAVVTCVVAGDVPFQLRSAS
ETGNDRKRKYFLQTTMLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNSPVF
SPTLYEVEFAEENQPGDKVLDVVATDADSGTNAELTYSITGGSVPDGLFEINPNTGEVRV
MSQLDREQLDHYQFLVAAADKGVPSLRGTATVVVKVLDRNDNDPKFMLNGYSFSVQENMP
PLSPVGMVTVNDHDEGDNARVQLSVEPDNGKFMIQNGTYTILSTISFDREKESTYSFRLK
AVDGGDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLDPRTSPETHVERVEAEDMDI
GLNSELEFSIVGGNPHGLFRISSEGEVTLAKEFTSKHIGLHRLVVKVKDKGTPPRHTTAL
VHIYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSRDQQSNIIFAVLGGFCVVVLII
AVAMIIRHVVLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKSKAPKPANPSEEDEG
GSLQKGLKFNLMNDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKK
HQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANSSKYSTKQLPHRRVTFSTANQAQDL
QDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRP
LPDVAMTGKCTRECTEYGHSDSCWMPGQPSPNRTKSAKSGPKLSTFVPYQEREGQERLMA
DSSSKPHGEERSGGGSNKVASIRFLPPYTSAYSTGGDSGKDCPREEIPLSQTADYAPATT
PSSQGSKREIYL
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgccagagtgccaatgcgatgtggtcacggtggagtgccatgctagtgtggatt
ttccttctcctctgttgctctgcaaatgtagtcagcaccatcatctaccaggtgaccgag
gagcagccacctaacacactgattggcagcttggcatctgaccagggcctgccagacacc
ggtcatctttacaagctcgaggtgggtgcaccttacctccgtgtcgatggcaaaaccggg
gatatctacaccactgagaccccaatcgatcgtgagactctcaaggactgccgcaacctt
ttcgagggtgatccttgtttcctagaattcgaggtatctattacagacctgatgaaaggc
actggacctcggctcatcgaaggccgcatcgagatcttggatgagaacgacaacactcca
cagttctcttcacccgtcttaacattgtcgatccctgagaacacgcacgtgggtgcgctt
ttcgcaatacctgtggccaccgacaaggattcgggaagcaatggcatcgccgattacgcg
ctatcgaccggcccagaagctgccaaccttttcagcctgcaggtggcgcaagactcagat
gagaaactgccacaactcattgtattgggaaacctggatagagagcagcgagattcatat
gacctcaatataaaagtggttgatggtggctctcctccccgccagagtagcgccctgctc
aggatcaccattacagatgccaatgacaatgtgcccaaatttgagaaattacactatgag
ggtgagctcccagaaaacagcccagtgggtcattctgttctacaagtaaaggctaatgac
tctgacatgggacccaatggagaggtcacctacagcctccaccaggcatcaccaattgtc
cagaggctccttaccattgatcgcaacacaggtatcattttcgtcaaaggctcagtggat
cgtgaagatatcagcatgctcaagttctacgtccaagctaaagacaatggtccacaatca
aaaagctccaaagcccttgtgactattacagtgaaggaccagaatgacaatgcaccctta
atcagaatccggggcattggccttgtgacgcatgaagatggtgtcgctaacatatcggag
gacatgcctgtaggcacagctgtggctctggtggaggtatcagatcacgatgaaggtgaa
aatgcagttgtgacctgcgtggtcgcaggggatgtcccattccagctgcgttcagctagt
gaaacaggcaatgaccgcaagaggaaatacttcctccagacaaccatgttgctggactac
gagaggatcaaagactacaggattgaaattgtggcagtggactctggcaaccctgcactg
tccagcacaaattccctgaaggtgcaagtgacagacatgaatgacaactccccagtcttc
tcgcccactttgtacgaggtagaatttgctgaggagaaccagccaggtgacaaggttttg
gatgtggtagccacggatgccgacagcgggactaatgcagagctgacgtacagtatcact
ggtggatcagtccctgatgggctctttgaaattaaccctaacacaggagaagtgcgtgtc
atgagccagttggaccgtgaacaattagatcactatcagtttctagtcgcagcagctgat
aaaggtgtaccaagcctgagaggaactgccactgttgttgttaaggtgctcgacaggaat
gataatgaccctaaatttatgcttaatggttacagcttttcagtccaagaaaacatgccg
ccccttagtcctgtaggaatggtaacagttaacgatcatgatgagggcgacaatgctcgt
gttcaactctctgtagaaccagacaatggcaagtttatgattcaaaacggaacatacacc
atactttcgactatttccttcgacagagaaaaggagagcacctacagtttccgacttaaa
gctgttgacggaggtgatccaccacgttcctcctatgttggcattaccattaatgttctt
gacgaaaacgacaatgctccatacgtcaccaagccctcaaactcttcatacaagttcttg
gatcctcgtaccagtccagaaacccatgtagaacgggttgaggcagaggacatggacatc
ggtttaaattcagaactggagttcagtattgtaggaggcaacccacatggcttgttccgc
atctcttcagaaggtgaggtaacgttggctaaagagttcacatccaaacacattggtctc
catcgactggtagtaaaagttaaagataaaggcacaccgccacgccatacaaccgcactg
gttcacatttatgtcaatgagaccatcggcaatgtctctcacgtcgaaggacttgttgga
cacagtctttacacaccacttgaaatggacattgcgggagatcccgattattctcgagac
cagcaaagtaacattatttttgcggtcttgggtggcttttgtgtggtcgttctaatcatt
gcagtggcaatgatcatcaggcatgttgtgctgaaggagaataaaagtggctaccaggca
ggcaagaaggagaccaaagatctctatgcccccaaaccaggacctaagagcaacaagaac
aagaaggcaaagaaaagcaaagctccaaagcctgccaacccatctgaggaggatgagggg
gggagtctccagaaaggcctaaagttcaacctcatgaatgatagcgtcaatgatagccct
aggattcacctgccgctgaactacccccctgggagcccagacctggggcgacactatcgg
tctaattctcctctgccgtccattcagctccaacctcagtcaccttctgcctcaaagaaa
caccaggcagtgcaggacctgccggccaccaatacctttgtaggaaccggggacaacaac
tcaacaggctcagaccagtattcggattacagctacaaggccaactcttcaaaatatagc
accaaacagctcccacatcgccgagtgaccttctccacagccaatcaggcacaagatctg
caggatccctctcagcacagttactacgacagcggcctggaagaatcagagacacccagc
agtaagagttcttcagggccccgtatcgggcccctcgccctacctgaagaccactacgaa
cgcactaccccggatggcagcatcggagagatggaacaccccgagaacgatctgaggcct
ctacctgatgtggccatgacggggaaatgcacacgcgagtgtacagaatatggccactcg
gattcctgctggatgcctggacaaccctcacccaaccgcaccaagagtgccaagagcggg
cccaagctctccaccttcgtgccttaccaggagagggagggtcaggagcgcctgatggct
gacagcagctctaagcctcacggagaggagcggagcggaggcgggagcaacaaagtggcc
agcattcgctttttgcctccttacactagtgcctattctacaggcggcgactctggcaag
gactgcccccgggaggagatccccctgagtcagacagccgattacgcccctgccactaca
ccctccagccaaggctccaaaagagaaatctacctgtga
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