Puntigrus tetrazona (Sumatra barb): 122357836
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Entry
122357836 CDS
T08985
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K28837
protocadherin-19, delta 2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
122357836 (pcdh19)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122357836 (pcdh19)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122357836 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Ig_Cad99C_N
Cadherin_FAT4_N
Motif
Other DBs
NCBI-GeneID:
122357836
NCBI-ProteinID:
XP_043113366
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All DBs
Position
14:24392320..24444524
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AA seq
1094 aa
AA seq
DB search
MHSKDMDFVQMFLCFLLCWTGVDAVYNLKYTVEEELRAGTKIANVTADAKNAGFALGNRQ
PYLRVISNSEPRWVNLSPAGLLITKQKIDRDAVCRQTPKCFISLEVMSNSMEICVIKIEI
IDVNDNAPRFPTNHIDIEISENAAPGTRFPLEGASDPDSGSNGIQTYTITPNDIFGLEIK
TRGDGSKIAELVVEKTLDRETQSRYTFELTAEDGGDPPKSGTVQLNIKVIDSNDNNPVFD
EPVYTVNVLENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQMFKIDPKTGVIT
VNGVLDHEELPVHEIDVQAKDLGPNSIPAHCKVIVNVIDINDNAPEIKLLSENSEMVEVS
ENAPLGYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMY
NLTILAEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARD
PDLGMNGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGD
PPLTSNATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGEN
GRLTYSISEGDMAYFEIDQINGEVRTTKTFGENAKPSYQITVVAHDHGQTSLSASAYIVI
YLSPDLNAQEQIGPVNLSLIFIIALGSIAVILFVTMIFVAVKCKRDNKEIRTYNCSFLYL
RRVAEYSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTL
PLGCRRSESTFLNVENQNSRNAAPNHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSS
YVNSRAHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTVPP
NNSQLPDQDQSEGFHCQDECRILGHSDRCWMPRVPMPARAKSPEHSRNVIALSIEATTVD
VPHYEDCGTIKRTFATFGKDGADEERAEQRGRRQTAEPAVCSPKTNGTVREAGNGREAVS
PITSPVHLKSPQSKPPSTYNTLKCRDAERIANHSLLRQPEGKDSEPAMREINTLLQDGRE
KESPGSKRLKDIVL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcattccaaggacatggatttcgtacaaatgtttttgtgctttctcttgtgctggact
ggagtcgatgccgtttacaatttgaaatacaccgtggaagaagagctgcgtgcaggcaca
aagatagccaatgtgacggcggacgcgaaaaacgcgggttttgcactgggaaaccgacag
ccttatttgcgggttatctccaattccgagccgcgatgggttaatctgagccccgccgga
ctgctcatcaccaagcaaaagatcgatcgggacgctgtttgccgacagacaccgaagtgt
tttatttcgttggaggtgatgtcgaactcgatggagatctgcgtgattaaaattgagatt
atcgacgtgaacgacaacgcgccccgcttccccaccaaccacattgacatagaaatctcg
gaaaacgccgctcccggtaccagatttcccctagagggggcaagcgatccggactccggg
agcaacggcattcagacgtacacaatcacccctaatgatattttcggtcttgagattaag
acgaggggggacgggtccaaaatcgcagaacttgtggtggaaaagactttagaccgagag
acgcagtctcgttacacgtttgaactcaccgcggaggatggcggagaccccccgaagtct
gggaccgtgcaacttaacatcaaagtaatcgactcgaacgacaacaaccccgttttcgac
gagccagtatacactgtaaacgtgctggagaattctcccattaacaccttagtcattgac
ctgaacgccacggacccagacgaaggaaccaatggcgaggtggtctactcgttcataaac
ttcgtgtccaacctgaccaaacagatgtttaagatagaccccaaaacgggagtcataaca
gtgaacggcgttttggaccacgaggagttgcccgtccacgaaattgacgtacaagccaaa
gacctgggtccgaattcaatccctgcccactgcaaagtgatcgttaacgtaatcgacatc
aacgacaacgcgccagaaataaaactgttgtcggaaaacagcgagatggtagaggtgagc
gaaaacgctcctctcggatatgtaatagccctggtgagggtctcagacaatgattcggga
gcgaatggaaaagtgcagtgcagactgcagggcaatgtgccttttagactcaacgagttc
gagagcttctccaccttacttgttgatggccgtctggatagggagcagagagacatgtac
aatttgaccattctggccgaggacagcgggtaccccccgctcagaagctcgaaatccttt
gcagtgaaagtaacggatgaaaacgacaaccccccgtacttcaccaaaccacactatcaa
gccatggtcctcgaaaataacgtgccaggtgcgtttctgctggcggtgtccgccagggac
cctgacctgggcatgaacggcaccgtgtcctacgagatcatcaaatcggaggtgcggggc
atgtctgtggaatcttacgtcaccgtgaactcgaacggcgaaatatacggcgttagggct
tttaatcacgaagatacgcggacctttgagtttaaagtctctgcgaaggacgggggagat
ccacctttgaccagcaacgccaccgtgcgcattgttgtactggatgtaaacgacaacaca
cctgtgatgaccaccccgcctctggtgaacggtaccgcggaggtgtccattcctaaaaac
gctggagttggttatttggttacgcaaataaaagctgatgattacgacgagggggaaaac
ggaaggttaacgtattcgatttcagaaggagacatggcatactttgaaatagaccagata
aacggcgaggtgcgaaccactaagacgtttggggagaacgcgaaaccgtcctatcagata
accgtggtggcgcacgaccacggccaaacttctctatccgcttccgcctacattgtcatt
tatctctctcctgatctcaacgctcaggagcaaatcggacccgtcaacctgtctctcatt
ttcatcattgccctgggttctattgcagtcatcctgttcgtcacaatgatctttgtggca
gtcaagtgcaaaagggataacaaggaaatccgaacatacaactgcagtttcttgtacctg
cgcagggtggcggagtactcctacggcaaccagaagaagtccagcaagaagaagaagctg
agcaagaacgacatccggctggtgccgcgggacgtggaggagacggacaagatgaatgtg
gtgagttgctcgtctctcacctcttcgctcaactacttcgactaccaccagcagactctg
ccgctgggctgcaggcgctccgagagcaccttcctcaacgtggagaaccagaactccagg
aatgccgcacccaaccacggctaccaccataccttcacagggcagggccctcagcagcct
gacctcatcatcaacggcatgccgctgcctgagacggagaattattccattgactccagt
tatgtaaacagcagagcacacctaattaaaagcacgtcaacattcaaggacatggaagga
aacagtctaaaggacagtggccacgaggagagcgaccaaaccgacagcgaacatgatgtt
cagagagggcactacgccgacacagctgtcaacgacgtactgaatatgaccgtacccccc
aacaactcgcagctacctgaccaagatcagtccgaaggtttccactgccaagatgaatgt
cgtatcttgggccactcggaccgctgctggatgccccgggtgccgatgccagcgagagcg
aagtctcccgaacacagccgcaacgtcatcgctctgtccatcgaggccaccactgtggac
gtacctcactacgaggactgtggcaccatcaaaaggacttttgccacctttggcaaagac
ggggcagatgaggagcgggccgaacagaggggcaggcggcaaacggcggagccggccgtc
tgcagccctaagaccaacggcaccgtgcgagaggccggaaacggccgggaagccgtaagc
cccatcacctccccggtgcacctgaagagcccccagtccaaaccaccctccacctacaac
acgctgaaatgcagggatgcggagcgcatagccaaccacagcctgctgcggcagccggag
gggaaggacagtgagccggccatgcgggagatcaacacgctcctgcaggacggccgtgag
aaggagtcccccggcagcaagcggctgaaggacatcgtgctttaa
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