Puntigrus tetrazona (Sumatra barb): 122357838
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Entry
122357838 CDS
T08985
Symbol
cnot6b
Name
(RefSeq) CCR4-NOT transcription complex, subunit 6b
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122357838 (cnot6b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122357838 (cnot6b)
Enzymes [BR:
ptet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122357838 (cnot6b)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122357838 (cnot6b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122357838 (cnot6b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_4
LRR_8
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
122357838
NCBI-ProteinID:
XP_043113370
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All DBs
Position
14:13398220..13407693
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AA seq
558 aa
AA seq
DB search
MPKEKYDPPDSRRMYTIMSSEEANSGKKSIWDGLEIIGNVRSLSSGLWSLTHLTALHLSD
NSLSRIPPEIAKLHNLEFLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLNQEIMSLYQEPDGTRRLLNYLLDNLNGAIKRIQTEPPPSRSWIVLQEP
ERTRPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEILSCNADIISLQE
VETEQYYNYFLVELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSMVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELKKELLELSSGKSVHAMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKLSSVSGETNSIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTNFNCNGKNGTSNGRITHGFKLKSAYENVLMPY
TNYTFDFRGVIDYVFYSRPQLNVLGVLGPLDTNWLLENNIIGCPHPHIPSDHFSLFAQLE
LVLPYPPLLNGVHLAGHR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggagaaatatgacccgcctgattccaggcggatgtacactatcatgtccagt
gaggaggcaaacagtgggaaaaaatccatctgggatgggctagaaataattggtaatgtt
cggagtctcagctcgggcctttggtcactcacacacctcactgctctgcacctcagtgac
aactccctgtcacgcatcccacctgaaattgccaagctgcacaaccttgagttcttggac
ctgtcgtccaataagatcaggagcctgccagcagagcttggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccgttcgaattggggaaattgttt
cagttacaaacactggggttaaaaggcaatccactcaatcaagaaattatgagcctctac
caggagccagatggtacccggcgacttctgaactaccttttggacaatcttaacggtgct
atcaaacgcatccaaacagagccacctccgtccaggtcctggattgtgctgcaggagccc
gaaagaacaagaccaacagccctgttaactgtaatgtgctacaacgtgctgtgtgataag
tatgctacacgtcagctctacggctactgcccatcctgggcccttaactggagctacagg
aaaaagtccattatgcaggagatcctcagctgcaatgcagatattatcagcttacaggaa
gtggaaacggagcagtattacaactacttccttgtggagctaagtaaacagggatatgat
ggattcttcagtccaaagtcccgggccagaaccatgtctgaatcggacaggaaacatgta
gatggatgtgcaatattctacaagactgaaaagttcagcatggtgcagaaacacacagta
gagtttaaccagctggctatggccaattcagagggctcagaggctatgctgaatcgggtc
atgaccaaggacaacattggggtggctgtgttgctggagctaaagaaggaattgttggag
ttgtcatcaggtaaatctgtccatgctatggagaagcagctcctactagtggctaatgct
cacatgcactgggatccagaatattctgacgtgaagctggtacagaccatgatgttcctg
tcagaggtgaagaatatcatagacaaagcctctcgcagtctgaagctctcctctgtgtct
ggagaaaccaacagcatccctttggtgctttgtgctgatctcaattcacttcccgactca
ggtgtagtggagtacctgagcacaggtggggtggactgcacacacaaagacttcaaggag
ctgcgctacagtgacagcctgaccaacttcaactgcaatggcaaaaacggcacatctaat
gggaggatcacacatggattcaagctgaagagtgcctacgagaatgtgcttatgccttac
accaattacactttcgacttcagaggtgtcattgactacgtcttctactccagaccacaa
ctgaacgtgctgggcgtcctcggacctttggacacaaactggctccttgagaacaatatc
attggttgcccacaccctcacatcccctcagatcacttctccctgtttgcacaactggag
ttggtcctgccttatcctccccttctcaatggagtccacttagctggacacaggtag
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