Puntigrus tetrazona (Sumatra barb): 122357840
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Entry
122357840 CDS
T08985
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122357840 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ptet01009
]
122357840 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ptet04515
]
122357840 (pcdh11)
Protein phosphatases and associated proteins [BR:
ptet01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122357840 (pcdh11)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122357840 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
TMEM154
RibLong
DUF6249
Prominin
Motif
Other DBs
NCBI-GeneID:
122357840
NCBI-ProteinID:
XP_043113372
LinkDB
All DBs
Position
14:17829209..18011536
Genome browser
AA seq
1244 aa
AA seq
DB search
MRTLQIFEESAAPTLSMDLASEAHVLVVLLTCLFLMCRAQEKDYTVKEEQPENVRIGNLR
KDLNLNLDPDVKLSSALQFKPVYKTGDVPLVKVEASTGEIFTTANRIDREKLCSGVFTEK
RCFYEIEVAVLPDEIFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAF
DPDIGINGIQHYELVKSVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDG
GTPPKSSTAILQVTVSDVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQI
HFSFSNQISPATKRHFAIDSTTGLITVKQPLDREVNPVHKLIVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIMNLVNGTVLLSENAPLNTKIALITVTDRDADLNGKVTCYTDHDV
PFRLKPVFNDQFLLETAAPLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVP
VFPQPEIQLSIPENNDPGTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDTRSGILSV
VKRLDREKQEKYSFTVIARDNGSSPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLP
LYGTVGLITVTDADAGDNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVK
AIDAGQMQTTSYAKVTINVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDND
TGMNAELQYSIIGGSPRGLFSIDKTTGNITLQEKIITADQGLHRLVVKVKDLGQPESLHA
IALVHLFVNDTVSNATFIQEQLRKSLETPLERNIGDNEVTPQTNGYVIVVIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVT
IEEPKSDDPTHEHINGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVAPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQ
IHTRQNQSQTPDKTFPVVPATCPHKQTQRRVTFHLPDGSQESCSDSGLGEQEPNSGASTT
QPLPLGFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSD
SCWMPPALTQFQTSGAATLPSFGFQQSWARGTKPDGRHTLGRSVPKDDLDKGSNRPQFYN
TLERHCGKKEDPVKVIPLASFSATSSPQTSAGGGSSAFLHEHQL
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgaggaccttgcagatctttgaagagagtgcagcacctactctgagtatggacttggca
agtgaggcccatgttctggtggttttactcacctgcctgttcttgatgtgccgggctcaa
gagaaggactacaccgtaaaagaagagcagccggagaatgtgcgcatcggaaatctgcgc
aaagacctaaacttgaacctagatccagacgttaaactgtcttctgcgctgcagtttaaa
cctgtctacaagacgggtgatgtgcctttggtcaaggtagaagcaagcacgggagagatt
ttcaccacagccaaccgcatcgatcgtgagaaactatgttccggagtcttcaccgagaag
cgctgcttttacgagatcgaggtcgccgtgctacccgacgagattttccgactggtcaag
atccgcttcctcatcgaagacatcaacgacaatgctccgctctttcaatcgacggttatc
aacatctccattccagaaaacacagccatcaacagccgctaccctgtcccttccgcattt
gaccctgatatagggatcaatgggattcaacactacgagcttgtcaagagtgtgagcgaa
tttggcctggacatcattgagacccctgaaggagacaaatggccccaactcatagtccag
cagagcctcgatcgggagacgaaggacacctttgtgatgaaaattaaagtagaggatggt
ggcacccctccaaagtccagcacagccattctgcaggtcaccgtctcagatgtgaatgac
aatcggccggtgttcaaggacagcgaggtggaggtaaacgttcctgagaatgccccaatg
ggaacatctgtcactcaccttcatgccactgatgctgatctgggatccaatgctcagatt
cacttctccttcagcaaccaaatctcccctgccaccaaacgacattttgctattgacagc
acaactggactgattaccgtcaagcagccattggacagggaagtcaacccagtgcacaag
cttatagttctggccagtgacggaagctctactccttcaagggctacagtgacagtcaat
gttacagacattaatgacaatgtcccctccatagatacccgttatataatgaatcttgtt
aatggcactgtgctgttgtctgaaaatgccccccttaacacaaaaatagccctaattact
gtgacggacagagatgcggatcttaacggtaaagtgacttgttacactgatcacgatgta
cctttccgactgaagcctgtctttaatgaccagtttttgctcgaaaccgccgcaccttta
gattacgagaccactcgagagtatgcgattaggatagttgcatctgactctgggaaaccg
cctctgaacacttcggcaatggtcctgattaaaataaaggatgagaatgacaatgtcccg
gttttccctcagcctgaaatccagctgtccattccagaaaacaacgatccgggcacacag
ttgataaaaatcagtgcaacagatgcagatagtggttctaatgcccttattatttatagt
cttggcccagatgctcctgatggttttaacatagatacccgctctgggatcctttccgtt
gtcaaaaggctggatagagagaagcaggagaagtattcattcacagtcattgccagggat
aatggttcttctcctctccaaagcaacgtcaccgtcaagctaatagtccaagaccaaaat
gacaacagtccagcctttacccatcccgaatacaacttctatgtgcctgagaacctgcct
ttgtatgggacagtgggtttgatcactgtcacggatgcagatgctggcgacaatgcagtc
gtcactctctcgattataaatggcaaggacaatttcatcatcgaccccaaaaccggggtg
atcaaaccaaacattacctttgacagggagcaacaaagttcctacacgtttgttgtcaag
gccatagatgcaggtcaaatgcaaaccacttcctatgccaaggtcaccataaatgttgtt
gatgtgaacgacaatcgaccagtgtttgtcatcccctcctcaaactactcctatgatcta
gtaccttcaaccaccagccctggatcagtggtgactagagtatttgccattgacaatgac
actgggatgaatgctgagctgcagtatagtattattggagggtcaccgagaggactgttt
tccattgacaaaacgacaggcaacattactctgcaggagaagattataacagcagaccaa
ggacttcataggctggtggtaaaggtcaaggacttgggtcagcctgagtcattacacgca
atcgcccttgttcatttgtttgtgaacgataccgtttccaatgccacgttcatccaggaa
caacttcgcaagagtttggagactcctttggagcggaacattggggacaatgaggtgaca
ccccagaccaatggctacgtaattgttgttattgccataatagctgggactatgacggtt
atcctggtgatctttgtgactgctttggtacgctgtcgacagacaccgagacacaaagtc
gtccagaagagcaagcagagcggtgagtgggtatcacccaaccaggagggtcggcaaatt
aaaaagaaaaagaagaagaagaagagatcaccaaaaagtttgctgctgaatttcgtaacc
attgaggaacccaagtctgatgaccctactcatgagcacatcaatggcaccttagacctc
cctgttgaactcgaggagcagacaatgggaaagtacaactgggctaccacaccaaccacc
ttcaaacccgacagtcccgatttagccaagcactacaaatccgcttcccctcagccaaca
ttccagatcaaaccagagacccctgtggctcccaagaagcatcatgtcattcaggaactc
ccactggacaacacattcgtggtgggctgtgactcgctctccaaatgttcctccagcagc
tccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaaagcacctggacaa
atccacaccagacagaaccagagccagactccagataaaacattccctgttgtcccagcc
acgtgcccccacaagcagacgcaacgtcgcgtgacctttcacctcccagacggctctcag
gagagctgcagtgacagcgggctcggagagcaggagcccaatagcggtgccagcaccacc
cagcctctgcccttgggcttccctcaggaagagtactatgaacagacctcaccgaacagc
cgcactgagggtgacggcaactctgaccccgagtccactattgaagtgaacctgcagaaa
gctctcgccgaggcctcggagacctgtacccaggaatgtctgatcctgggtcattctgac
agctgctggatgccgccagcgctgacccaattccagacgtccggcgctgccactctgccc
tcctttggttttcaacaaagctgggcgcgggggaccaagccagatgggcgtcacaccctc
ggcaggtcagtgcccaaagatgatctggacaaagggagcaaccggccccaattctacaac
acacttgagagacactgcggcaagaaagaggatcccgtcaaggtcatccctctagccagc
ttttccgccacgtccagcccccagacgtccgcgggcggaggctcttccgccttcctgcac
gagcatcagctgtag
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