Puntigrus tetrazona (Sumatra barb): 122357982
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Entry
122357982 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like 2
KO
K13126
polyadenylate-binding protein
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122357982
09123 Folding, sorting and degradation
03018 RNA degradation
122357982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122357982
03041 Spliceosome [BR:
ptet03041
]
122357982
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122357982
mRNA cycle factors
Stress granule specific factors
122357982
Spliceosome [BR:
ptet03041
]
Complex C
Other components
Complex C specific factors
122357982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
122357982
NCBI-ProteinID:
XP_043113627
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Position
14:25981040..25991018
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AA seq
346 aa
AA seq
DB search
MKMRMKESSSLYVGDLEPDVTEAMLFERFGSLGSVQSIRVCRDRLTCRSLGYAYVNFERA
ADAERALDTMNFDLMREKPMRLMWSQRDPSLRKSGVGNVFIKNLEKTIDSEALYDIFSSF
GNILSCKVSEELLETLXYEHRETQEAAGKAIEKLNGVLINEQKVFVGHFKSQKEREAEMQ
ARNKEFTNIFIKNLGADVDDELLTEMFSKFGRTLSVRVMTDEKGNSRGFGFASFENHSDA
KRVTTRAITEMNRRIVDSKPVYVALAQRKKERQALLRQVRSLSSYSSGQPQDSPQVNPGL
WSLQHIYPPEDHHHHGLFCEQINEAFAVLQSHQPMEAVQMSFSQVV
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaggatgaaagagagcagctcgctgtatgtgggcgacctggagccggacgtg
accgaagccatgctgttcgagcgattcgggtcgctcggttcggttcagtcgatccgagtc
tgcagagatcgactcacctgccgctcgctcggttacgcgtacgtcaacttcgagcgagcc
gccgacgccgagcgtgccttggacaccatgaactttgacctgatgcgggagaagcccatg
cgtctgatgtggtcccagagagacccttctctgaggaagagcggcgtgggaaacgtcttc
atcaagaacctggagaagaccatcgacagcgaggctctgtacgacatcttctcctccttc
ggcaacatcctgtcctgtaaagtaagtgaagagctcctcgagacgctctgatacgaacac
agagagacgcaggaagccgctggaaaggccattgagaaactgaacggcgtgttgatcaat
gagcagaaagtgttcgtgggacacttcaagtctcagaaggagcgcgaggctgaaatgcag
gccagaaataaagagttcacgaacattttcatcaagaacctcggggcggatgtagacgac
gagctgctgacggagatgttcagtaaattcggccggactctgagcgttcgggtcatgacg
gatgagaagggaaactccagaggcttcggtttcgccagcttcgagaatcacagcgacgcc
aaacgagtgaccaccagagccatcaccgagatgaaccgtaggatcgtcgactccaagccc
gtctacgtggctctggctcagaggaagaaggagcgccaggctctgctcaggcaggtgcgg
agtctgtcttcttacagcagcggccagcctcaggacagccctcaggtgaaccccggtctc
tggtccctgcagcacatctatcctcctgaggatcaccatcatcacgggctcttctgtgag
cagataaatgaagcgtttgctgttcttcagtctcatcagccgatggaagcagttcagatg
tcattcagtcaagtcgtctga
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