KEGG   Puntigrus tetrazona (Sumatra barb): 122358173
Entry
122358173         CDS       T08985                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ptet  Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040  Spliceosome
ptet04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ptet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122358173
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122358173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ptet03041]
    122358173
   04121 Ubiquitin system [BR:ptet04121]
    122358173
   03400 DNA repair and recombination proteins [BR:ptet03400]
    122358173
Enzymes [BR:ptet01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122358173
Spliceosome [BR:ptet03041]
 Complex B
  Other components
   Prp19 complex
    122358173
 Complex C
   Prp19-CDC5 complex
    122358173
Ubiquitin system [BR:ptet04121]
 Ubiquitin ligases (E3)
  U-box type E3
   122358173
DNA repair and recombination proteins [BR:ptet03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    122358173
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Aladin WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_EIPR1 PEP5_VPS11_N Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_Nup120_160 U-box Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N WD40_RFWD3 PROPPIN Ge1_WD40 Beta-prop_DCAF12 eIF2A Tricorn_2nd Cytochrom_D1 zf-Nse Cep57_MT_bd ATG16
Other DBs
NCBI-GeneID: 122358173
NCBI-ProteinID: XP_043113894
LinkDB
Position
14:4468821..4474137
AA seq 504 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIAPQAAPASQPAAVGAGEAMEISEQVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVRAEDLGKYRQVASHAGLHSASIPGILSLDLCPTDTNKVLTG
GADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPAQSVVFSASPDSTIRVWSVSGGNCVQ
VIRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFHP
DGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLWD
LRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVTG
VAXGEHAQFLASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtctttggtttgtgctatttcaaacgaggttccggagcacccctgtgtctcccctgtt
tccaatcaagtgtttgagagacgtctgatcgagaaatacatcgcggagaatggagctgac
cccatcaacggacagccgctgtctgaggagcagcttattgatatcaaagtgtctcatccc
attcgaccgaaggctccctctgccactagtatccctgcgatcctcaagtctctgcaggat
gagtgggatgccgtgatgctgcacagttttactctgaggcagcagctgcagaccacccga
caggagctgtctcacgctctctaccagcacgatgcggcctgcagagtcattgctcgtctc
acgaaagaggtcactgccgccagagaggctttggctacactcaaaccccaggctggattg
atcgctccacaagccgctcctgcttctcagcctgcagctgtgggtgctggtgaggccatg
gagatcagtgagcaggtgggaatgactccagagatcatacagaagctccaagacaaggcc
actgtcttaaccaccgagagaaagaagagaggaaagaccgtgccggaggagctggtccga
gcagaagatctcggcaagtatcgccaagtggcatcgcatgctggtcttcacagtgccagt
ataccaggcatcctctctctggatctctgcccaacagacaccaacaaagtcctcacaggt
ggtgcggataagaacgtggtggtgtttgaccgtcgggaggagcagattgttgccaccctc
aaagggcacaccaaaaaggtctcgtctgtcatctaccatcctgctcagtctgtggtgttc
tcagcatctccagacagcactatccgcgtgtggtcggtcagcgggggtaactgcgttcag
gtgatcagagcccacgaggccagtgttactggcctttctctccacgctactggagactac
ttgctgagctcatctgaggaccagtactgggccttctcggatatccagaccggacgtgtc
ctaactaaagttactgatgagactgctggctgtgctctgacctgcgctcagttccatcct
gacggtctgatttttggcacgggcacggcagattctcagatcaagatctgggacctgaag
gaacgaaccaatgtagccaacttccctggacattcaggtcctgtgacgtccattgccttc
tctgagaatggatactatctggccactggtgctcaggacagttcactcaaactgtgggat
ttgaggaagctgaagaatttcaagacaatcactttggacaacaattatgaggtgaagtct
ttggtctttgaccagagtggaacatatctggctgtgggtggttcagacataagggtttat
atctgcaaacagtggtctgaggtcctcaacttctctgatcattctggtctggtgactggt
gtggctntaggtgaacatgctcagttcctggcttccactggcatggacagaagtctcaaa
ttctacagcctttaa

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