Puntigrus tetrazona (Sumatra barb): 122358507
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Entry
122358507 CDS
T08985
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04136
Autophagy - other
ptet04140
Autophagy - animal
ptet04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122358507 (atg16l1)
04136 Autophagy - other
122358507 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122358507 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122358507 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ptet03029
]
122358507 (atg16l1)
Membrane trafficking [BR:
ptet04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
122358507 (atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
122358507 (atg16l1)
Mitochondrial biogenesis [BR:
ptet03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122358507 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
eIF2A
Ge1_WD40
Nup160
KASH_CCD
DUF6049
DUF6212
HALZ
Crescentin
Motif
Other DBs
NCBI-GeneID:
122358507
NCBI-ProteinID:
XP_043114262
LinkDB
All DBs
Position
15:23376578..23400826
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AA seq
624 aa
AA seq
DB search
MAGRRVECLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQVVFSERLQTEKFEQ
QNRHDLSPGVEGGRSDSLQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDKE
IQSNEAKMLEYQQQISHLEGECRELRNSLADLERANQTLRDEYDALQITFSALEEKLRKT
TEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELADAAKEPLPIEPDDDIEVL
SEDAGKATSGTGETSPSRQISRTPSRRVSQPPPPAGLLDSISNIFGLSDSVQPGFVPSDS
RRRRSVNSFGSSPESAEVPPACADVRVPSTALHVFDAHDGEVNAVRFSPGSRLLATGGMD
RRVKLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVM
SGHFDKKVRFWDIRAESIVRELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVR
QTFNAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINSV
SWSPSGTYVASVEKGSKAVLWSDM
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgggccgtagagtcgagtgtttgtggaaacgtcatgttgtggagcagctgaaacag
agagaccgagttcagcgccaggcctttgaggagatcatacaccagtataaccggttgttg
gagaagtctgatcttcaggttgtgttttctgagcgccttcagaccgaaaaatttgagcaa
cagaacagacacgacctcagtccgggcgtagagggcggtcgcagtgattccctgcaacag
gaaatggctcagatgagaattaaacatcaggaggagctgacggagctgcacaagaaacga
ggagagctggcccagagcgtgattgaactaaacaaccagattcagcagaaagacaaagag
atccagagtaatgaagccaagatgctggagtatcagcagcagatctctcatctggaagga
gagtgtcgcgagctccgcaactctctggccgatctggaacgagccaatcagacgctgcga
gacgagtacgacgccctgcagatcaccttcagcgccctggaggagaaactacggaaaacc
acagaggacaatcaggagctggtgacgcgctggatggccgagaaagcgcaggaggccaac
agactcaacgcagagaacgagaaggactccaggcgcaggcaagcgaagcttcagaaggag
ttggcagacgcagcgaaggaacctcttcccatagagccagatgatgacatcgaagttctc
tcggaggatgctgggaaggcaacgagcgggaccggtgaaacgtcgccgagcagacagatc
agtcgcacgccgagtagacgagtgtctcagcctcctcctccggctggactgctggactcc
atctctaatatcttcggcttgtctgattctgtccaacctggtttcgtcccatctgactcc
agaagacgtcgctcggtgaactcgttcggctcgtctcctgagagcgcagaggttcctccg
gcgtgcgccgacgtccgcgttccctccaccgcgctgcacgtcttcgacgcccacgatgga
gaagtgaacgccgtcaggttcagtcccggttctcgtctgcttgccacgggaggcatggac
cgcagggtgaagctctgggaggtcgtttctggccgatgtgaacctaaaggagcgctgacg
ggcagcaatgccggtatcaccagtatagagtttgatagtgcgggctcgtatctgttggct
gcgtcgaatgactttgccagcagaatctggacggttgacgactacagactgcggcacaca
ctcaccgggcacagcgggaaggttttatcagctcggtttctcctcgataacgctcgaatc
gtctccggcagctacgatcgaacgctcaagctctgggacctacgcagcaaagtctgcatg
aagacggtgtttgctggttctagctgtaatgatatcgtctgcacggagcagtgtgtgatg
agcggacacttcgataagaaagttcgtttctgggacatcagggcggagagtatcgtgcgt
gagctggagttactgggacgcgttacgtctttggacctcaatcacgaccggactgagctg
ctgacctgctctcgtgacgatctggtgaaaataatcgacctgcgcagcaatgcagtgagg
cagacgtttaacgctcaaggtttcaagtgcggttcagactttaccagggtcacgttcagt
cctgatggtagttacgtggcggccggttctgcagacggcgttctgtacatctggaacgtt
ctaacgggaaaactagacaaaactcttgacaagggtcacagttctgccataaactcggtg
tcctggtctccctcgggcacgtacgtggccagcgtcgagaaaggcagcaaggccgtgctc
tggtctgacatgtga
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