Puntigrus tetrazona (Sumatra barb): 122358623
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Entry
122358623 CDS
T08985
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122358623 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122358623 (parn)
Enzymes [BR:
ptet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122358623 (parn)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122358623 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
G_path_suppress
FMP23
NCBP3
Motif
Other DBs
NCBI-GeneID:
122358623
NCBI-ProteinID:
XP_043114459
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All DBs
Position
1:29277698..29283383
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AA seq
650 aa
AA seq
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MEVTRQNFKEVLPEVCSAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMNFLLFQFGVCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTQEEESQLREQYEERRSQINGAGPASYTPTSGMGACNVPEDQRDFI
RTVEQKVDALLTNSDQTLDLEPCTGFQRKLIYQTLNTKYSKGLHVETLETEKKERFIQIS
KVDEEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCG
PLPEELDDFKEVAMSVFPRLLDTKLMASTQPFKEIISNTSLAELHKQLREKPFKSPTTEC
PEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLGSFLTPPKSYISARSKLLEPFYNKL
FLMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAF
VCLSQTEQVQIAVNTSRYAESYRIQTYAEYLQSRQKSTHTSRRWTDDGWADTSYSAASGF
SRLQAVKRSISPSLEEQNHEADSSWTNYSSKKIKTEGSCSQTYAEVAGSCDWPRLQPDEG
GASSPVQDEMEPEESSANQSQGKRSRRYKKRKSDASETTPPTLFDVPHVW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaccagacagaattttaaggaggttcttccagaggtgtgcagcgctgtgcag
gaggcggatttcatctctatagacggggaattcacaggaatcagtgatggcccgtcagtc
agtgctctgactaatggactggacacaccagaggagagatacaccaagctgaggaagcac
tccatgaacttcctgctcttccagttcggcgtctgcaccttcagatacgaccagaaccag
tccacgtacgtcacgaaagccttcaacttctacatcttccccaagcccttcagccgcacg
tctccagacatcaagttcatctgtcagagctccagcatcgacttcctggccagccagggc
ttcgacttcaacaaggtcttccgcagcgggatcccgtacctgacccaggaggaggagtct
cagctgagggagcagtatgaggagaggcggagccagatcaatggggcggggccagcctcg
tacacgcccacctcagggatgggtgcctgtaacgtgcctgaagaccagagagacttcatc
cggacggtggagcagaaggttgacgctctcctgacgaactctgatcagactctggatctg
gagccctgcaccggctttcagaggaagctcatctatcagaccctcaacacaaagtattct
aaaggtcttcatgtggagacactggagacagagaagaaggagcggttcattcagatcagt
aaggtggatgaagaggagaggaggaggagggagcagcagaagcagcagagagagcaggag
gagctgaatgatgctgtgggcttctccagggttatcagagccatctctaaatctggtaaa
ctggtggtgggtcacaacatgctgctggacgtcatgcacaccatccatcagttctgtgga
ccactgcctgaggagctggatgacttcaaggaggtggctatgtctgtgtttcccaggctg
ttagacaccaagctgatggcgtccacacagcccttcaaggagatcatcagcaacacatca
ctggctgaactacataaacagctgagagagaaacccttcaaatcacccaccactgagtgt
cctgaagggctccagagttacgacacatccacagagcagcttcatgaagccggttatgat
gccttcatcacaggactgtgcttcatctccatggctaactacctggggtcttttctcacg
cctccaaagagttacatctctgcacgctccaaactgcttgaacccttctacaacaaatta
tttctgatgagggtgattgacattccctacttgaacatgagcggacctgacctgcagccc
aagagagatcacgtcctgtacgtcacgttccctaaagagtggaagaccagtgatctgtac
cagctcttcagcgccttcgggaacatccaggtgtcgtggatcgatgacacgtcggcgttc
gtgtgtctcagtcagacggagcaggttcagatagctgtgaacaccagccgctacgcagag
agctaccgcatccagacctacgcagagtacctgcagtccagacagaagagcacacacacc
agcaggaggtggaccgacgacggctgggcagacacttcctacagcgctgcctcgggcttc
agccggctgcaggcggtcaagaggagcatcagtccctcgctagaggagcagaatcacgaa
gctgacagcagctggacaaactacagcagcaagaagatcaagaccgaaggaagctgctcg
cagacgtatgctgaggtcgcaggctcctgtgattggcccagacttcagcctgatgaaggc
ggagcctcaagtccagtgcaggacgagatggagcccgaggagtcctcagccaatcagagt
caaggtaaaaggagccgcagatacaagaagaggaagtcagacgcttccgaaacgacgcca
ccgacgctctttgacgttcctcatgtttggtag
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