Puntigrus tetrazona (Sumatra barb): 122358982
Help
Entry
122358982 CDS
T08985
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122358982 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122358982 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122358982 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122358982 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122358982 (col4a3)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122358982 (col4a3)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122358982 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122358982
NCBI-ProteinID:
XP_043114937
LinkDB
All DBs
Position
15:19550700..19578860
Genome browser
AA seq
1682 aa
AA seq
DB search
MRWSRCRRWPSFELVTGGNCARGSGADEKMDSCLISRATLLGMMFLALLTPAQAKEGCFC
SEKSGCNCQGLKGQKGVMGFPGLSGIKGIQGYQGNEGPPGLPGEKGNIGFPGIPGPKGSR
GVSGTPGISGQPGLPGFPGNEGPRGPNGLPGCNGAKGEHGAPGFIGQMGAPGKQGIPGIQ
GAKGDSCYLPPSGQVKGRCGFPGRDGDKGSLGSPGSPGLFGPDGPRGSPGIGGIPGPQGE
KGLEGRSMVIPGPIGQKGQRGPSGIPGQKGVKLFVTGPKEPKGDSGDAGDIGCLGPIGLR
GRSGPKGKKGETGEPGGLGKLGKDGLIGESGRTGIPGDQGYPGVIGIAGEEGLKGNSGAP
GIPGEFIVIDNRIKGLKGFRGLPGPPGLRGSEGFIGLPGYAGPPGASIPGPTGKPGPPGF
RGIKGERGDPVPNSTGPRGQDGSPGERGPPGDPGPPGIPEVNTLWGPKGLKGERGLTGPQ
GLRGDPGIQGEQGELCRLCAASVSEPGPPGQCGDSGSPGEPGIGGYPGHKGCQGFKGSDG
PPGPPGNLGLPGYPGLPGPTGDHEMRHVLGEKGKQGNCGAEGLLGINGKDGRPGNPGFKG
PLGAKGIPSPPGPKGNQGNPGNCGDPGCPGPMGSQGSMGVGRPGVPGEKGCMGEVGRQGN
TGEPGEKGSPGPVQRTAGDPGDPGLPGPPGQRGPPGNDGCVGPQGLPGCIGLKGEKGQSM
PGAPGLTGPKGDKGVKGKQGLPGYGSVGRPGPPGPPGNPGPKGEITFGSPGPMGRQGLPG
DEGNLGLPGNCGPPGLSGCSGQRGREGPTGESGVRGLDGLPGIAGVPGSCIPGAKGDEGS
FGIRGLDGPNGLPGLKGPQGETGPPGQGVPGITGEIGIPGKIGDAGWIGIRGPKGFQGRD
GSPGFPGTRGDQGNPGITGPPGVDGNPGPRGFQGPKGLMGRNGLPGDVGKPGNPGDQGVC
GLKGPPTNVMNPGDPGDPGLPGLLGLPGAKGELGLPGNYGRCGKNGVPGRPGPPGPPGDA
GQNGLPGNRGPDGYFGDPGVMGFPGIKGLKGLPGVRGETGIPGVPGPNGPKGIKGEPSPF
APGPRGQCGEKGEPGFPGLRGEKGDKGICGTCGPSGLSGAPGERGEPGVPGVPGPPGGQG
DEGFNGFPGPPGYEGPCGPPGVPGSAGDPGPPGLRGDQGKDGFPGPAGDKGDRGPPAIGN
PGLSGIKGEKGTKGSSGPLGPCGPPGPCGPAGDIGPLGQLGEMGPRGFPGPPGACISGPK
GEQGPNGSPGLQGLRGPRGPAGEPGPGIKGDKGNIGLKGLLGLPGCVGDRGAPGLQGKDG
NPGFKGPKGNKGPLGSTGPLGQKGQCGPIGSPGLKGCKGTRGTKGTKGCDVVGQIITLPG
NPGFPGQGGVKGNVGEQGPQGLQGPQGAQGQKGSRGADGGAGQMGKSGPRGKTGPKGTKG
FPGLSGEMGPKGSQGPPGPSKDGFLFTKHSQKTSVPTCPPGSKHLYSGYSLLFINGNNRG
HGQDLGTVGSCLQMFSTMPFLVCNPNETCYYAFRNDYSYWLSTDTPISSDMELLSGRLLA
NYISRCSVCEAPTNVIAVHSQTMEIPECPRGWLPLWKGYSFVMQTGAGAEGSGQPLISPG
SCLEEFLKIPFIECHGRGTCNFYPDSFSFWLASLDPSRMFSTPIHQTTRQQDISRCRVCM
KQ
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgagatggtcgaggtgccgcaggtggccttcgtttgagctagtgaccggtgggaattgc
gcgcgcgggtccggtgcggatgagaagatggattcttgcctgatatcgcgagcgacgctt
ttgggaatgatgttcctggcgcttcttaccccggcacaagctaaagagggctgtttttgc
agtgagaaatcaggatgcaactgtcaaggactcaaaggacaaaagggtgtgatgggcttt
cctggtttgtctggtataaaaggaattcaggggtatcaaggaaatgaaggccctccagga
cttcctggtgaaaaaggaaatattggatttccaggcataccaggacctaaaggttctagg
ggagtttcagggacaccaggaatctctggccaaccaggactaccggggttccctggaaat
gaggggccgagagggcctaatggtctcccaggatgcaatggagcaaagggtgagcatggt
gcgccaggctttatagggcagatgggagctcctgggaagcagggaataccaggaatccaa
ggagctaagggagatagctgttacttgccaccctctggacaagtgaaaggacgttgtggt
tttccaggcagagatggagataaagggtcattgggatcgccagggtcaccgggattattt
ggaccagatgggcccagaggttctccaggaataggcggcatacctggaccacaaggagag
aagggtctagagggtcgaagcatggtaatacctggacccataggtcaaaaggggcagagg
ggaccatctggtatacctggacaaaaaggtgtaaagttatttgtaacaggaccaaaggag
cctaagggtgacagtggggatgctggagacattggatgtcttggcccaattggtttacgt
ggtcgttctggtcctaaggggaagaaaggggaaactggggagcccgggggtctgggtaaa
cttggaaaggatgggctgataggagagtctggccgtacgggaattcctggagaccaagga
tatccaggagttattggaatagcaggggaggagggtctaaagggtaacagtggtgcccct
ggtatccctggagagttcattgtaatagataacaggatcaaaggtctaaaaggttttcgt
gggcttcctggacctcctggtctacgaggtagtgaaggttttatcggacttcctggatat
gcgggtcctccaggggccagcataccaggacctactggaaaaccaggtcccccaggattt
agaggtataaaaggggaaagaggagatcctgttcctaacagcacaggacccagagggcaa
gatggatcaccaggggaacgaggaccccctggtgaccccggacctccaggaattccagaa
gtcaacaccctttggggaccaaaagggttaaagggcgagagaggcctaacaggccctcag
ggtctgcgtggagatcctggcatacaaggtgagcaaggagaactttgcaggctgtgtgct
gcttctgtttctgaacctggacctccaggacaatgtggagattcaggcagccccggagag
ccaggtattggaggatatccaggccataaaggatgtcaaggattcaaaggttcagatggt
ccacctggtcctccgggtaacttaggtcttccagggtatccaggcctaccagggcccaca
ggagaccatgaaatgaggcatgtgcttggggagaaaggcaagcaaggaaactgtggtgca
gaaggactactggggataaatgggaaagatggccggccaggcaaccctggcttcaaagga
ccactaggagcaaaaggaattccaagtcctccaggccctaaaggcaaccaaggaaatcca
ggaaactgtggggatcctggctgcccaggtccaatgggcagccaagggtcaatgggtgtt
gggagaccaggggtacctggagaaaaaggatgtatgggagaagttggccggcaaggaaat
actggagaaccaggtgaaaaaggatctccagggccagtacaaaggacagcaggagaccca
ggtgatcctggactgcctggtccacctggtcaacgaggacctccaggtaatgatggttgt
gtaggacctcaaggattaccaggatgcattgggttaaaaggagaaaaaggacagtcaatg
ccaggagctcctggattaactggtcctaaaggtgataagggtgtgaaaggtaaacaaggt
ctgcctggttatggaagtgtaggccgtcctggacccccaggaccaccaggaaatccaggt
ccaaagggtgaaataacgtttggctccccagggcccatgggtcggcagggcttgccagga
gatgaaggaaaccttgggctaccaggaaattgtggccctcctggattatcaggatgctca
ggtcaaagaggaagagaaggaccaacaggagaaagtggtgtgcggggtcttgatggtttg
cctggaatagctggtgtacctggaagctgtattcctggagccaaaggcgatgaagggtcc
tttggcattagagggctagatggacctaatgggctaccagggctgaaagggccacaaggt
gaaactggaccacctggacagggtgtacctggtataacgggtgagattggaatacctgga
aaaattggagatgcagggtggattgggatccggggaccgaaagggtttcaaggaagggat
ggttcaccaggctttccaggtacacggggagatcaaggaaatcctggaattactggtcca
cctggtgtagatggaaatcctggaccacggggattccagggacccaaaggtttaatggga
aggaatggactaccaggtgatgtaggaaaacctgggaatcctggagaccagggggtctgt
ggtctcaagggaccaccaacaaatgttatgaatccaggggatcccggtgaccctggccta
ccaggtcttcttggtctacctggcgctaaaggggaattaggacttccaggcaattatgga
cgatgtgggaagaatggagttccaggcagacctggtccaccaggccctcctggtgatgct
ggccagaatggacttcctggaaatcggggtcctgatggatactttggggatccaggagtt
atggggtttccaggaataaaaggcctaaaaggtttacccggtgttcgtggagagactggg
attcctggtgtcccaggaccaaatggaccaaaggggatcaaaggtgaacccagccccttt
gcaccagggcctcgaggacaatgtggtgaaaaaggtgagccaggctttccagggcttaga
ggggaaaaaggtgacaagggtatatgtgggacatgcgggccatcaggtttatcaggggct
cctggtgaaagaggcgaacctggagtaccaggagttccaggacctcctggaggtcagggt
gatgaaggtttcaatgggtttccaggtccacctggatatgaagggccctgtggtccacca
ggtgttcctggttcagctggagatcctgggcctccaggacttcgtggagaccaaggcaag
gatggctttcccggaccagcaggggataaaggagacagagggcccccagcaattggaaat
cctggcctatctggcatcaagggtgagaaaggtactaaaggcagttctggaccccttggg
ccatgtggacctccaggaccctgtggtccagctggagatattggtcctctgggccaactt
ggggaaatggggccacgcgggtttccaggtccacctggtgcctgtatcagtggtccaaaa
ggggagcaaggacctaatggatcacctggcctacaaggactcagaggaccacgtgggcct
gctggcgaaccaggtccaggcataaagggagataaaggcaacattgggctcaaggggctt
ttgggattacctggctgtgttggtgaccggggagctccagggttgcaaggtaaagatgga
aatcctggtttcaagggaccaaaaggaaataaggggcctttgggttctactgggccactc
ggccaaaaaggacaatgtggtccaattgggtctcctggattgaaaggttgtaaaggaact
cgtggaactaaaggcactaaagggtgtgatgttgtgggtcagatcataactctcccagga
aaccctggtttccctggacaaggcggcgtaaaaggaaatgtaggagaacaaggacctcaa
gggctacaaggtcctcaaggagcacaaggtcaaaaaggaagcagaggtgcagatggaggt
gctggacaaatggggaaatctggaccaagggggaaaactggcccaaaaggaacaaaaggt
tttcccggtttgtcaggtgaaatgggtcccaagggttcacaaggtccacctggcccttct
aaagatggattcctttttaccaagcacagtcagaaaacatcagtaccaacctgtcctcct
gggtcaaaacatttgtactctggatattcgcttctcttcatcaacggcaataaccgtgga
catggacaagacctaggaactgtgggaagctgtttgcaaatgttctccaccatgcctttt
ctggtgtgtaatcccaatgagacgtgttactatgcctttcgaaatgattactcctattgg
ctgtctacagacacaccgatatcttccgacatggaactgttatctggtagactgttggca
aattatatcagcaggtgttcagtgtgtgaggcaccaactaatgtgatagcagttcacagc
cagaccatggaaatcccagagtgcccaagaggatggcttccactatggaaaggttactcc
tttgtaatgcaaacgggtgcaggcgcagagggatccgggcagccgcttatttctcctgga
tcctgtctggaagaattcctgaagattccattcatagaatgtcacggtcgtggcacctgc
aacttctatcctgattccttcagcttctggcttgcatcacttgatcctagcagaatgttc
agtactccaatccaccagacaacaagacagcaagatatcagccgctgtcgggtctgtatg
aagcagtag
DBGET
integrated database retrieval system
