Puntigrus tetrazona (Sumatra barb): 122359351
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Entry
122359351 CDS
T08985
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03030
DNA replication
ptet03420
Nucleotide excision repair
ptet03430
Mismatch repair
ptet03440
Homologous recombination
ptet03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122359351 (rpa1)
03420 Nucleotide excision repair
122359351 (rpa1)
03430 Mismatch repair
122359351 (rpa1)
03440 Homologous recombination
122359351 (rpa1)
03460 Fanconi anemia pathway
122359351 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122359351 (rpa1)
03032 DNA replication proteins [BR:
ptet03032
]
122359351 (rpa1)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122359351 (rpa1)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122359351 (rpa1)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122359351 (rpa1)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122359351 (rpa1)
MMR (mismatch excision repair)
122359351 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122359351 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
122359351
NCBI-ProteinID:
XP_043115579
LinkDB
All DBs
Position
15:complement(14493969..14515049)
Genome browser
AA seq
602 aa
AA seq
DB search
MAVRLSEGAIESLTKGIEVSNPVLQCVNIRKIDGGSGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLASNCVCMLKRSVTNVLKDGRRVVVILDMDVIKSADQMAGKIGDPTPYVEG
QSKPQQNAAPAPNVRALQPQNGSDGSMNRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNP
YQSKWTVRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNNEVDKFYSLIEQG
KVYYISKGTLKIANKQFSSLKNDYEMTLNGETTISPCEDSHDVPMVQCDFVSIADLESRE
KDTIIDVIGVCKNTEDVTRIMTKNSREVSKRNIQLMDMSGRVIQLTMWGNDAETFDGSGQ
PILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHAMDGQSMTELRGP
GGGGGNTNWKTLAEVKNEHLGHGDKADYFSCVATIVYIRKENCLYQACPSKDCNKKVVDQ
QNGMYRCEKCDKEFPDFKYRLMLSANVADFGDNQWVTCFQDTAETLLGQNAGYLGQLKDS
NEPAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKQ
AA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcgactgtcagaaggggcaattgagtccctgacaaaaggaattgaagtcagc
aaccctgttcttcagtgtgtgaacattcgtaagattgatgggggtagtggactgtcccgt
ttccgtctcatgatgagtgacggcctacacaccatgtcctcgttcatgctctccacgcag
ctcaatcccatggctgagcagaaccagttggcctctaactgtgtgtgtatgctgaagaga
agcgttactaatgttctcaaagatgggcgacgtgtggtagtcatactggacatggatgtg
atcaagtctgctgatcaaatggcgggaaaaattggagacccaactccttacgtggagggc
cagtcaaagccacaacaaaatgcagctccggctccaaatgtacgggcattacagccccag
aatggaagcgatggttcaatgaacagaccttctgctcagagcttcgggaaaaagcccatg
gctgcccccaacactcctggaggcagctctaaagtcgttcctattgccagccttaatcca
taccagtcaaaatggactgttagagcaagagtcaccaacaagagtgccatccgcacatgg
agtaactccagaggggatgggaagcttttttccatggagcttgtggatgaaagtggggag
atcagagcaactggatttaataacgaggtggacaaattctactccctcatcgagcaggga
aaggtctactacatctcaaaaggcaccttgaagattgccaacaaacaattctcttcactt
aagaatgactatgagatgactctaaatggtgagacaaccatcagcccttgcgaggacagc
catgatgtccccatggtgcagtgcgactttgtttccattgctgacctggaatcccgggag
aaagacaccatcatagatgtgattggagtgtgtaaaaacacagaggatgtgacgcgcatc
atgaccaagaacagccgtgaggtttcaaagaggaacatacagctgatggacatgtccggc
agagtcatccagctcaccatgtggggtaatgatgcagagacgtttgatggcagtgggcag
cctatcttggccattaagggagcaagattgtctgactttggtgggcgttctctttctact
ctctacagcagcacggtcatgatcaaccctgacattcctgaggcgtacaaactacgggga
tggtatgataaggaaggacatgctatggatggacagtcaatgacagagttaagaggacct
ggtggtggtggtggaaacacaaactggaagaccctagcggaagtcaagaatgagcactta
ggacatggcgacaaagctgattatttctcttgcgtcgccaccatagtctacatccgtaaa
gagaactgcttgtatcaggcctgtcccagtaaagactgcaacaagaaggtggtggaccag
cagaatggcatgtaccgctgtgagaaatgtgacaaagaattccctgacttcaaataccgt
ctcatgctctcggccaacgttgctgattttggagacaaccaatgggtgacttgctttcag
gacactgctgagaccctcctgggccaaaatgcaggttatctcggccaactcaaggactcg
aatgaacctgcatttgatgaggtctttcagcatgcaaacttcaatacttttgtcttccgg
aacagagtaaagctggagacctacaatgatgaatcgcgcattaaagtgacagtggtggat
gccaagccggtggaccacagagaatacagcaaacggctgatcatcaacataaggaagcag
gctgcatag
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