Puntigrus tetrazona (Sumatra barb): 122359501
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Entry
122359501 CDS
T08985
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03022
Basal transcription factors
ptet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122359501 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
122359501 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122359501 (ercc2)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122359501 (ercc2)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122359501 (ercc2)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122359501 (ercc2)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122359501 (ercc2)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122359501 (ercc2)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122359501 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
122359501
NCBI-ProteinID:
XP_043115759
LinkDB
All DBs
Position
15:complement(13454482..13461103)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYAKQTGVKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPSQPVCQFYEEFDAVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYAILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE
TDVYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFHPVTMAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMVFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEDMLKKIAQIAQQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgaggggttattagtctactttccgtatgactacatttatcctgaa
caatattcgtacatgcttgagctgaagaggacgctggacgcaaagggacatggagttctc
gagatgccttcaggaacaggaaaaactatttctcttctttccctcattgttgcttaccag
aaggcttaccctttagaagtcaccaagcttgtctactgttctcgcactgtgcccgagatc
gagaaggtggtagaggagctaaggaaactaatggattattatgcaaaacaaacaggggtg
aaaaatgatttccttgcactggcgctttcttcacggaaaaatctgtgcattcatcctgag
gtgagttctctgcgttttggaaaagaagtggatggaaagtgtcacagtctgacagcgtcg
tatattcgagcgcagcatcacagtaacccaagtcaacctgtctgccagttctatgaggaa
tttgatgcagtaggcaggcaggttcccattccccctggtatatataacttggatgatctg
aaggactttgggcgcagaaaaggctggtgtccgtacttcttggcacgttatgcaattctt
cacgcaaacattgtagtgtacagctaccattacttacttgatccaaaaattgcagatctg
gtctcaaaagagctcgcaaagaaatctgtggttgtgttcgatgaggctcacaacatcgac
aatgtgtgtatcgattccatgagcgtcaacattacaaggaggactctggatcgctgtcag
actaatgtggaaaccctgcaaaacaccattagcagaattaaggaaacagatgctgcaaaa
cttagagaagaatacaggagattagttgaaggtcttaaagaagcaaatgttgcaagagaa
actgacgtctatctgtccaacccagttcttccagatgaaatcctgcaagaggctgtacct
ggcagcattcgcactgctgagcactttgtgggctttatgaagcgcttcctggagtacctg
aaggcacgtttgcgaatccatcacgtggttcaggagagcgcccctcagttcctcaaagac
atctttgagaaggtctgcattgaccgcaaacccctgagattttgtgctgagcggctgcgc
tcgctgctgaggacgctggagatcgcagacatcgctgacttctcagccattaccctgatc
tcacactttgccacactcgtcagcacctacagcaaaggcttcaccatcatcattgagccc
tttgaagataaaacgccaacaatagcaaatcctgttcttcacttcagttgcatggacccc
tctatcgccataaagcctgtgtttgggcgctttcaatcagtcattatcacatcagggact
ctctctcctctggacatctatccacgcatccttgatttccacccagtcactatggcatcc
ttcaccatgacactggcacgaacctgcctgtgccctcttattgtaggcagagggaatgat
caagtagcgatgacctccaagtttgagaccagagaagattttgctgtgatccggaattat
ggaaacctgctgctggaaatgtctgccattgttcctgatgggatcgttgcgttcttcacg
agttacatatacatggagaacattgtggcctcatggtatgaacagggcatcctagagaac
atccaaagaaacaagctcattttcatagaaacccaggatgcagccgaaactagcatggcc
ctggagaagtatcaagaggcctgcgagaacggcagaggagcaattctactctcggtggca
agaggaaaagtgtcagaggggattgactttgttcatcattttggccgtgccgttatcatg
tttggagtgccgtatgtttacacccagagccgaatcctcaaggcgcggttggaatacctt
agagatcagtttcagatccgggaaaatgactttctgacatttgatgcaatgcgccatgcg
gctcagtgtgtgggcagagccatccgaggcaaaactgactacggcttgatggtctttgca
gacaagcgttatgcacgtgcggataagcgaggaaagctgccccgctggatccaggaacac
cttacggatggaagcctaaatctgaccattgatgagaccgtgcagttatccaagcacttt
ctacgacagatggcccagcccttcagacgggaggatcagttgggtctgtctctgctgacc
ctggagcaactgcagtctgaggatatgcttaagaaaattgctcagatcgcgcaacaagcc
tga
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