Puntigrus tetrazona (Sumatra barb): 122359828
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Entry
122359828 CDS
T08985
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122359828 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122359828 (rad54b)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122359828 (rad54b)
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_22
Motif
Other DBs
NCBI-GeneID:
122359828
NCBI-ProteinID:
XP_043115948
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Position
16:16652160..16664778
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AA seq
918 aa
AA seq
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MRRSGAPSQLRGNAVKKPRFLPPGPAKNDGPLFSHPQPEPSAPSPPTPTPSLGNVLLNKV
QRCLGSGDSPAVSNAPVASKALARVLSAVPHSECKENGSSSSSDFSETKPADKDSCSTQP
NTLASCTATARYYSVMWCKASSRKHKRWEGDAVLVARGRSVVLKDMEGRDIGRGSGYKAS
ELESLCEGQTLMVGGKQIEVMGVISDEDYAKGRCFQDAAVETPAETVLKSPVYRPVSRSF
TKPTLKGGARTDSAPEKPNCKPRHDPNAPGALVMPRPTTDHQWLYNKTGSPLVDVVIDPH
LTNHLRPHQRDGVVFLYECLMGMRLPGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGG
RPILRRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVMVISYE
MLLRSVDQLKELDFGVLICDEGHRLKNSNIKTVGALTALSCERRLILTGTPVQNDLQEFF
SIIEFVNPGTLGTSAAYRKVYEEPILRSRQPTCTEEERCIGEERAAELFRLTGVFTLRRT
QEIINQYLSERIEWTVFCKPTELQLRLYGVLLATRPIRACLSGASKHTYTHSPHLACINA
LKKLCNHPGLLYNTLKEKLDEMYDDEMMELFPEGYSTGAFSTADSGKLLVLTDLLSAIQH
VNHTDRVVLVSNYTQTLDILQDVCDHIGYKWCRLDGQTPVAQRQRIVNSFNSPHSSNFLM
LLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEE
KIYQRQVSKQGLSGTVVDLSKKAEHISFSAEELRDLFSFDPNTSCLTHDLLDCQCTGNGN
TPAGFVKEIKEDTGRACQLGRHSDSVVSFPQRVSMSELMHWRHFSGDVQSYDDIYLNHAR
NHITYAFQSTTSTSQTTV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagatctggagctccgagtcaactccgtggaaatgctgttaagaaacccaggttt
ctgccaccagggccagcgaagaatgatgggccacttttctctcatccccaaccagaacca
tccgcaccatcaccaccaacacccacaccttctttgggaaatgtgctgctcaataaggtc
cagaggtgtttgggaagtggagatagtccagctgtgagtaatgctccagtggccagtaag
gctttagccagggtgctgagtgcagttcctcacagtgaatgtaaggaaaacggctccagt
tcttcatctgacttttctgaaactaaaccagcagataaagacagctgctcaacacagcca
aacacgcttgccagctgcacagctaccgcacgctattatagtgtaatgtggtgcaaggca
tcatcaaggaagcataagcgctgggaaggcgacgctgtgctggttgccagggggcggtct
gttgtcctcaaagacatggagggccgggacattggacgaggttcaggctataaggcatca
gagctggagagcttgtgtgagggtcagactcttatggtaggagggaagcaaatcgaggtc
atgggggtcatatccgacgaagactatgccaaaggacgttgttttcaagatgctgctgtt
gagactcctgcagaaacagttttgaagtctcctgtttatcgaccagtttccagatccttt
accaaaccaacactcaagggaggtgcacgtacagattctgctcctgaaaaaccaaattgt
aaacccagacatgacccgaatgcaccaggtgcccttgtgatgccgcgaccaacaactgat
caccagtggctgtataataaaacaggttctccactggtggatgtggtcattgacccccat
ttaaccaatcatcttaggccacatcaaagagacggcgtggtcttcctttacgaatgttta
atgggaatgagattgcctggccgctgtggggcgattctggcagatgagatgggactgggg
aagacgctgcagtgtgtttgtgttctgtggactctactgagacagggcccctatggtgga
cggccaatactgaggagggcacttgtggtttgtccaggaagtttggtcaagaactgggcc
gctgagttcaacaagtggctgggcagagagaggatcagtgtttacactgtggaccaggat
caccgtgtggaggactttgtctcatctcctctttgctccgtcatggtgatcagttacgag
atgctgttgcgctctgtggaccagctgaaagagctggattttggagtgctcatctgtgac
gagggtcatcgccttaaaaacagcaacatcaaaacggtcggagcactcacagccctctca
tgtgaacgccgtcttatattaacaggtactccagtgcagaatgacctgcaggaatttttt
tccatcattgagtttgtaaatccaggaactctgggaacatctgcagcctacaggaaggtt
tatgaagagcccattctcagatctcgccagcccacctgcactgaggaggagcggtgcatt
ggagaggagcgtgcagctgagctctttcgtctaacaggtgtgtttacgttacggcgcact
caggagatcattaatcagtatttatccgagcggatagagtggaccgtattctgcaaaccc
actgaactgcagctgcgcctgtatggagtcctgctggccacacggcccatcagagcctgc
ctctctggtgccagcaaacacacttacacacacagccctcacctcgcatgcatcaacgcc
ctcaagaagctctgcaaccaccccgggctgctctacaatactttaaaggaaaagctggat
gagatgtatgatgatgagatgatggaactctttcctgagggatactctacaggtgccttc
agcactgcagactctgggaaacttctagtgctaacagacctgctgtcagcaatacagcat
gtcaatcacacagacagggtggttttggtgtctaactacacacaaactcttgacatactg
caggatgtctgcgatcatataggctataaatggtgtcggcttgatggacagacacctgta
gcccagcgacaacgaattgttaattcctttaacagcccacactcgtccaacttcctgatg
ttactcagctccaaggctggaggggtgggactaaacctcatcggtgcctcccatcttgtt
ttatatgatatagactggaaccctgccaatgacatacaggccatggcacgagtgtggcga
gatggacagaagaaaactgttcacatctacagatttcttacaacaggttcaatagaagaa
aagatttatcagaggcaggtaagtaaacaggggctttctgggacagtggtggacctgtcc
aagaaagctgagcacattagcttttctgctgaggagctacgggaccttttcagttttgac
cctaatacctcctgcctcacacatgacctactggactgccagtgcactggaaatggaaac
actccagcaggttttgtgaaggagataaaggaggacaccggaagggcatgtcagctgggt
cgtcattccgacagcgtggtgtcatttccacaacgagtcagcatgtccgagctcatgcac
tggaggcatttctctggagatgttcagtcatatgatgatatttacctaaatcatgctcgt
aaccacatcacatatgcctttcaaagcaccacttccacttcccaaaccacagtctaa
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