Puntigrus tetrazona (Sumatra barb): 122360361
Help
Entry
122360361 CDS
T08985
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122360361 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122360361 (cnot3a)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122360361 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122360361 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
122360361
NCBI-ProteinID:
XP_043116832
LinkDB
All DBs
Position
16:complement(23306694..23314761)
Genome browser
AA seq
895 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVEAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPATLMA
TSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTTEISEDKRGRSTDSEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLGSFSSAVQQHVPQSQQQA
QVKLTSTSAPSNNTPSPPSHPTLPASTTSSLPSSSTPGPVTSNSQSQATSVPGVEGSRLG
LGLGKGGVTVTSSSSGTQIPGLGMSGISGSLSTMAGLLSGSTPAPYAQAAAGGTAGSVPS
GPVGSGSGSVSSGISVPNTGAGGANTGATSNGTGTGAGIGLLGSSPGHGTLTGGILNLVP
GQTALQGSAQIPVSLVGTAPGGGTGESGLGGNGSSSVASAGAGTNIAPARPPSGLKQNGA
TSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSSPSPAFT
DSTPGGGSLLNGPHSYTLNTEAIKAPEPPSSLKAMAERAALGLTLDGEISSLHLPDRAPP
GPTTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQEAAWTHMPHPSDSERIRQYL
MRNPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRF
HTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgaaatagatcgatgtttgaaaaaagttgcggaa
ggcgtcgaacagtttgaagacatttggaaaaagcttcacaatgcagccaatgccaaccag
aaggaaaaatacgaggctgatctcaagaaagaaattaaaaagctccagcggctacgagac
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
cggaagcttattgaaacgcaaatggagcgatttaaggtggttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggctcagaaagtagacccagcgcagaaagag
aaggaggaaacggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgaaagtgaagttgagtccctctctgttcaaacacggaaaaagaaaggggacaag
gagaaacaggatcggattgaagagctaaagaggttaatcgaaagacaccggtaccacatt
cgtatgctagagaccatcttgcggatgttggataatgattcgatccaggttgaagctatc
cataagatcaaagatgatgtggaatattacattgactcttcgcaagacccagactttgaa
gagaatgagttcctctacgatgatctagatttggaagacataccggcaacattgatggcg
acgtctcctcagggccatattgaagatgagatgttccttcagtccagcagcacaccgacc
tccaccacttcctcttctcccatccctccatctcctgccacaggcacaacggagatttcg
gaggataagagaggtcgatcgacagacagtgaagtcagtcagtctcctgtgaagaacggc
aacccatctctctcgtccttctcctcatccgcctcctcaggctcctcctcctcctcctct
tcgctggtttctatggctactgttgttggtggctgcacagcggtctctgggggcagcagt
ctgctgggaagctttagcagcgcagtgcagcagcatgttccacagtctcaacagcaagca
caggtcaaactcacctcaacatctgctccctccaacaacacgcctagtccacctagccac
cccacgctacctgcctccactacttcctctctgcctagttccagcacacctggcccagtt
acttccaattcccagtcccaggctacatctgttcctggggttgagggctctagactgggt
ttgggcctggggaaagggggtgtgacggtgaccagcagcagtagtggcactcagataccg
ggtctgggcatgtccggcatatctggttcactcagcaccatggcagggcttctctcaggc
tctacccctgccccctatgcccaggcggctgcaggtggaacagcaggtagtgtccccagt
ggtccggtgggcagtggcagtggcagtgtaagttctgggatatctgtaccgaatacaggt
gcagggggagcaaacacgggagcaaccagtaatggtactggtacaggtgctggtataggc
ttgctagggtccagtccaggtcacggtaccctaactggaggaattctgaacctggtaccg
gggcagactgctctccaggggtctgcacagatacctgtaagccttgtgggcacagcgcct
ggaggaggaactggagagagtggattgggtggaaatggaagcagttctgtggcgagtgca
ggagcggggacaaacatagctcctgcaagaccccctagtggcctcaaacaaaatggagca
accagctacagtgctgtagttgcagacaacacaccagactcctcactcagcagtgccagc
caatcacaaaacagccattcctcatcctcgagctcatcaacaaatcaaactctggataat
ggccccagtttattgagttctatcactctacccccctcctccccatcacctgctttcact
gacagcacacctggtggtgggagtctgctaaacggcccacactcctacacactcaacaca
gaagccatcaaggctcctgaaccaccaagctctttaaaagctatggccgaacgggcggca
ctgggattgacactggatggagagatttcatcactacacctcccagatcgagccccacct
ggacccacaacggctcctcagcctgctgtttcagaggtcaacctgcctccatctttaggg
gcatgtccgttaggccccacccctctcactaaagagcagctttaccaacaggcaatgcag
gaggcagcatggacacacatgccccacccgtccgattcagagagaatcaggcagtacctg
atgagaaacccatgtcctacaccgccattccaccaccaggtgcccccacatcattcggac
tctattgagttctaccagagattgtccactgaaacgctcttcttcattttctactacttg
gagggcacaaaggcacagtacctgtcggctaaagcactgaagaagcaatcgtggaggttc
cacaccaaatacatgatgtggttccaaaggcacgaggaacccaagaccatcactgatgag
tttgaacagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaa
ggatttacgttcgagtacagatacctggaggacagagacctacagtga
DBGET
integrated database retrieval system
