Puntigrus tetrazona (Sumatra barb): 122361006
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Entry
122361006 CDS
T08985
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122361006 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122361006 (cnot10)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122361006 (cnot10)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_12
ARM_TT21_N
TPR_8
ARM_TT21
TPR_7
ANAPC3
TPR_10
TetR_C_5
TPR_MalT
SCAF11-like_C
Motif
Other DBs
NCBI-GeneID:
122361006
NCBI-ProteinID:
XP_043117843
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Position
16:9663556..9674296
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AA seq
749 aa
AA seq
DB search
MAETGSDQAGDMKHDSISSPGISDQEKEMATNAFEAFKTGSYDESLKHLDSLQELNKEDY
KITMNKAITEFYKSGQTTTSTLKQTLMTLKNQMHTAVDDIDGLDDVENSILYYNQAVIHY
HMRQYSEAISIGEKLYQFLEPFEEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLEKLTAK
DGNSKNGKGESSNSTNKESAAMKAEFTAMIEAAKSKMHQYKVRAYIQMKSLKACKREIKS
VMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPLKTGECVRCMFWNNLGC
IHFAMGKHNLGLFYFKKALQENDHICAQLGDGGNGQAAKKFTGIPMCALLANKRYELLYN
CGIQLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCITANKGSSEQETKGLPSKKGI
VQAVVGQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQHDS
KPDNGSKSCSQSGNAESGSETSDACSGKTQEGDKFIPAAPSSPLRKQEVENLRCSILACS
AYVALALGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEALISLDRISDAIAHLNPENV
TDVSLGVSSSEQDQGSDKGDLEPVESSGKQTPLCYPSSVSSARATMLFNLGSAYCLRSEY
EKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPSVKPSSSPD
LRKKPLPFQSSQPVQPIQTPSSFTQVQRK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacgggctcagatcaagctggtgacatgaaacatgacagcatttcatcccct
gggatctcggatcaggagaaggagatggcaaccaatgcttttgaggcttttaagactgga
agctatgacgagtccctgaaacaccttgacagccttcaggagctgaacaaagaagactat
aagattacaatgaataaagcgatcactgagttttataaaagtgggcagacaacaaccagc
accctgaagcagacgctaatgaccttgaaaaatcagatgcacacagccgtggatgatatt
gatggtttagatgatgtggagaacagtatcctctactacaatcaagcggtgatccattac
cacatgcgacagtattcagaagctatatccatcggggagaagctctaccagtttcttgaa
ccttttgaagaaaagtttgctcaggccgtttgtttcttgttggtggacctatacctgctc
accttccagccagagaaggcactgcatctgttggctgtgttggagaagctcactgcgaag
gatgggaacagcaaaaatggcaaaggagagagctccaacagcacaaataaggaatctgct
gctatgaaagcggagttcacagctatgatcgaggcagctaaatcaaagatgcaccagtat
aaagtacgagcctatatccagatgaagtcactgaaggcctgtaaacgggaaatcaaatct
gtgatgaacacatctggaaattctgcgccatcgctcttcctgaagagtaactttgagtat
ttaagaggaaattatcgtaaagctgtgaaactcctcaacagttcaaatatcgcggagcat
ccaggacccttgaaaacaggtgaatgcgtgagatgtatgttctggaataatctgggttgt
atccatttcgccatggggaaacacaacctgggtcttttttactttaaaaaagcacttcaa
gaaaatgaccacatatgcgcccagctcggtgacggcggtaatggacaggcagctaagaag
ttcacaggcatccctatgtgtgctctgttagctaataagcgctatgagctgctgtacaac
tgtgggattcagttacttcatatcggtcgacctctggcagcgtttgagtgtctgatggag
gcggtgcaggtgtatcactccaaccctcgactctggctcaggctcgccgaatgctgcatc
acagctaataaagggagctcggagcaggaaacaaaaggtttacccagcaaaaagggcatt
gtgcaggccgttgttgggcagggctatcatcgcaagattgttttagcatcgcagtccaca
caaaacaccatttacagtgagggccagtcggcggcaatcccagtggccagtatggagttt
gctgcgatctgtctgcgtaacgctttgctcctgctcccagagcaccaacagcacgacagc
aaacctgacaacggctccaagagctgcagtcagtcaggcaacgcagagagcggcagcgag
accagcgatgcctgcagtgggaagactcaagagggagacaagtttattcctgctgccccc
tcatcgccattgagaaagcaagaggtggagaatctcaggtgctcaattctagcctgcagt
gcatatgtggctcttgctctcggggacaacttaatggctcttaaccatgcagaaaagctc
ctgcatcagacaaagctgtcaggatcgctcaagttcctgggtcacctatatgccgctgaa
gccctgatctctctggacagaatctctgatgccattgcgcatctgaacccggagaacgtt
actgacgtctcgttaggcgtctcatcgagtgaacaagatcaaggttccgataaaggagat
ctggagcctgtggaatcctcggggaagcagacccctttgtgttaccccagctcagtaagt
tctgcccgggccacaatgcttttcaacctgggcagtgcgtattgcttgaggagcgagtat
gagaaagcccgcaagtgcctccatcaggctgcttcaatggtgaacactaaagagattcct
ccagaagccattttactgggcgtctacttagaactgcagaacggaaacacacagctggcc
ctacagatcatcaaacggaaccagctcctcccgtctgtcaagccctcctcctcccctgat
ctccgtaagaaaccacttcctttccagtcatcccagcccgtacagcccatacagaccccc
tcctcctttacacaagtacagcgcaagtga
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