Puntigrus tetrazona (Sumatra barb): 122361044
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Entry
122361044 CDS
T08985
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha B isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122361044 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ptet03310
]
122361044 (rorc)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122361044 (rorc)
Nuclear receptors [BR:
ptet03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122361044 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CTNNB1_binding
Motif
Other DBs
NCBI-GeneID:
122361044
NCBI-ProteinID:
XP_043117915
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Position
16:8869564..8896248
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AA seq
508 aa
AA seq
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MEIDEPASPDLNHDSSQSKRGNPVHKKSHLTQIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQSSSVQYSCSRQSNCPIDRASRNRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDS
LFAEVERHRQQQRLQANSVQEPQPLPAYRSSKEPREQSSHLIPPLPPSYPYSVEPELQGC
PAEVHPYLECRIGEAQAQSLAYRGSHRRGESNILPAGRGFDSTRSTPEAILNMSGSEMGF
RPFDPESSFFSYPTSLHIEELSASIVRSHRETTQYRPEELQALRWKVFNREEIHAYQSKS
VDEMWQHCAVRLTDAVQYVVEFAKRIPGFRQLCQNDQIALLKSGSMEVVLVRMSRMFNTE
NNTVFFDGKFAGTELFKSLACGDLIAAVFDFAHNLCALRLTEQQMAVFTALVLLNAVDRP
CLEDRERVQRVRRDVELALSHILHRDNQESLLLKLYQRVPVLKSLCALHIEKLQWFRQLY
PLTVHSLFPPLYKELFGSDTDIQTLTTH
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgatgagcccgcatcaccggacctgaaccacgacagctctcagagtaaaaga
ggaaatccagtgcacaagaaatcccatcttactcagatcgaggtgatcccatgtaagatc
tgtggagataagtcatcaggggttcattatggagttatcacttgtgagggctgcaagggc
ttctttcgcagaagccagtcctccagcgtgcagtactcctgctccagacagagcaactgt
cctatcgaccgagccagccgtaaccgctgccagagctgtcgcctcaaaaaatgtgtcgct
cagggaatgagccgcgatgcggtgaagtttggccggatgtctaagcgccagagagactct
ctgtttgcagaagttgagagacaccggcagcagcagcgtcttcaggccaactcagtgcaa
gagccccagcctcttccagcctaccgatccagcaaagagcccagagaacagtcgtcacat
ctcatcccacctctacctccatcctacccttactctgtcgagcctgaactgcaaggctgc
cctgcagaggtgcatccatacctggagtgtcgcataggcgaggcccaggctcagagtctg
gcctacaggggctcccacaggagaggtgagagcaacatcttgccagctgggagaggattt
gactccacaaggtctacaccagaggctattctgaacatgagcggcagtgaaatgggcttt
cgtccttttgaccctgagagctcattcttttcttacccgacatctctgcacatagaggag
ctctctgcaagtatcgtacgctcccaccgagagacgactcagtatcgaccggaagagctg
caggctctcagatggaaggtttttaacagagaggagatccacgcttaccagagcaaatcg
gtggatgagatgtggcagcactgtgcggtgcgcttgacagatgcggttcagtacgtggtg
gagtttgctaaacgtatcccaggattccgtcagctttgtcagaatgatcagattgctctc
ctcaagagtgggtctatggaagtggtactcgtccggatgagccggatgtttaacacagaa
aacaacacagtattctttgacggcaaatttgcaggaacagaactttttaaatccctcgct
tgtggcgatctaatagctgctgtgtttgacttcgctcacaacctgtgtgcgctgagactg
actgaacagcagatggcagttttcactgcgctcgtcctcctcaatgcagtagatcgaccg
tgtctggaggacagagaacgagtgcagagagtccggagagatgtggagcttgcccttagt
cacattctgcacagagacaatcaagagagtctactgcttaagctgtatcaaagagtccca
gtgctgaagtctctgtgcgcgctgcatattgagaaactgcaatggttccggcagctttac
cctctcacggtgcattccctcttccctcctctatacaaagagctgttcggctctgacaca
gatatacagacgctgaccactcattaa
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