Puntigrus tetrazona (Sumatra barb): 122361672
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Entry
122361672 CDS
T08985
Symbol
dicer1
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptet03036
]
122361672 (dicer1)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122361672 (dicer1)
microRNA pathway
RISC loading complex
122361672 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SLFN-g3_helicase
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
122361672
NCBI-ProteinID:
XP_043118449
LinkDB
All DBs
Position
17:complement(6352541..6380088)
Genome browser
AA seq
1876 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRGENGKRTVFLVNAASSVVQQASTVRTHSDLQVGDYMSEDMTSWP
EEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITDHPYREIMKICE
GCPGCPRILGLTASILNGKCDPCELEEKIQNLEKILQSNAETATDLVVLDRYASQPXEVV
LDCGLYQDQSGLSERLLSELDEALNFLNDCNLSGHREERDPTFISKQVLNDCRAVLTVLG
PWCADKAAGIMVRELQKYIKHEQEEMNRKFLFFTDTILRKIHALCEEHFSPASLDLKFVT
PKVIKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEAEAKEKPEANF
PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQM
EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR
APVSNYIMLADSERTKTFEEDLKTYKAIEKILRNKCSKSAECSEFELEPVTDDDNVLPPY
VLRSEDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCKTVELKTGGYQSTLFLPINSP
LRVPVTGPTMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET
NVPGRPGSTKRRQCYPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYP
PEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELKKSGFTLSAEQLELITRLHQYIF
SHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQY
TKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKT
KYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILV
PELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQSLPPDFRYPNL
DFGWKKSIDSKSFISCPSACMEDDDHCKHGTSSDSDHTALEGCSTEASQPPEGALPCENC
NTPDEKLETHMLPVTDLQTPNKDKSDCVCSRNLPNGTRGESDDLPHRHDICQCSQLGPLE
SDLSTQTTTSVPVRPSPAGEPQPQPSDECIPGRNSDLCDGHVKKPTSNCCPKPELATSTT
APSEVSSEVSDVTPGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHA
ITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYV
VNQDKSSTDKWDSDENKDLANGKASDDDDDDDDEAEDVEVEPSKEEVNVEDELEYYYEHI
RFIDNMLIGSGAFGKKISLQPAEPGYEWKAPKKAHNSQFSPDGGADEFDYSSWDAMCYLD
PSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGCYLTS
CGERAAQLFLCSLGLKVLPAEKQSSGGSAELQYGWLKIPPRCMFDHPDAERTLNHLISGF
ENFERKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQ
HSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMD
SELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFS
ANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAAR
RALRSLKANQPQVLNN
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagctggtgacccctgcctcctcacccatggggcccttcttcggtctc
ccgtggcaacaggaagctatccatgacaacatatacacaccaaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactatagtctgcttaaatactggctcagggaag
acctttatcgcagtactcctaatcaaagaactctcccaccaaatccgtggagagaatggg
aagagaacagttttcctggtgaatgcagcatcatctgtggttcagcaagcatctactgta
agaacccactctgatctccaagtaggcgactacatgtcagaagacatgacgtcatggcct
gaggagatgtggaacagagagatgatagagaatcaggttctggtcatgacgtgccacatc
ttcctgcatgtgttaaaaaatggagtcttgccactatcaaaaatcaacctgctggttttt
gacgaatgccaccttgcaatcacagaccatccttatcgggaaataatgaagatttgtgag
ggttgcccaggttgtcctcgcattttgggtctgactgcttccattttaaatggcaaatgt
gacccttgtgaactggaggagaagattcaaaacctagagaagattctgcagagtaatgca
gaaactgccactgatcttgtggtgcttgataggtatgcgtcccagcccngtgaggttgtg
ctggactgtgggctgtatcaggatcagagtgggctctctgagaggcttttaagtgagctg
gacgaagcccttaattttcttaatgactgcaacttatctggtcatagagaagaaagagat
cccacattcatctccaaacaggtgctgaatgactgtcgtgccgtgttaactgtgctgggt
ccttggtgcgctgataaagctgcgggaatcatggtccgagaactgcagaaatatatcaaa
catgagcaggaagagatgaaccgcaagttcctgttcttcacagacaccattctgagaaaa
atccacgccttatgtgaggagcatttctctccagcgtccctagacttgaagtttgtcact
cccaaggtcatcaaacttctggagattctccacgagtacaagcctttcgaacgccagcag
tttgagagtgtggagtggtacaataatcgcaatcaagacaattatgtttcttggagcgat
tctgaggacgaagatgaggatgaagaggcggaggcgaaggaaaagcctgaagctaatttt
ccgtcgcctttcaccaacatcctctgtggaataatctttgtggaaaggcgatatacagca
gttgttttaaacaggcttatcaaggaggcaggaaagcaggatccagagctggcctacatc
agtagcaacttcatcacaggtcacagcatcggcaagaaccagcctcgcaacaaacaaatg
gaggtggagttcagaaagcaagaggaggtcctgaggaagttcagagcccatgaaaccaac
ttgcttattgcaaccagcattgtggaagaaggcgttgatattccaaagtgcaatttggtc
gttcggtttgatctgccgacagagtaccggtcatacgtgcaatccaaaggtcgtgcccgg
gctccagtctccaattacatcatgctagctgacagtgaacgaacaaaaacatttgaagaa
gacctcaagacctacaaggccatagagaagatcctccgaaataagtgctcgaagtcagca
gaatgcagtgagtttgaactggagccggtgaccgatgatgacaacgttctaccaccttac
gtcctgcgctcagaggatggcggcccgcgtgtcacgatcaacacagccattggacacgtc
aacagatattgtgcgcgtttgcccagtgatccattcactcatcttgctccgaagtgtaaa
actgtggagctgaagactggaggttatcaatccactctcttccttcccattaactcacca
ctcagagttcctgtgacagggccaacaatgaattgtgcaagacttgcagagaaagctgtt
gctcttctttgttgtgaaaagctgcacaaaattggtgaactggatgatcatttgatgcca
gtgggaaaggaaactgtgaagtatgaggaggagctggacctgcatgatgaggaggagacg
aatgtgccaggaagaccaggctccaccaaacggagacagtgttacccaaaagccatacca
gagtgtctgcggggctgttaccctgtgccagagcagccttgctacctttacgtcataggg
atggtccttaccacccctcttcccgatgagctcaacttccggcggaggaagctctaccca
ccagaggacactacccgatgttttggcattctgacagctaaaccaatacctcggatccct
cacttccctgtgtatacacgttctggtgaggtgaccatttcaattgagctgaagaagtcg
ggcttcactctgagcgcggaacagctggagctgatcacacgtctgcaccagtacatcttt
tctcacatcctccgtctggaaaagccagcactggagtttaagcccgtagaggcagattct
gcctactgcgttctacctctcaacattgttgaggattccaatacattggacctggatttc
aagttcatggaagatattgaaaagtctgaagcacgcatcggcattccaaatactcagtac
accaagcaaaacccattcattttcaaattggaggactaccaggatgctgtcatcattcca
aggtatcgtaattttgaccagccacatcggttctacgtggctgacgtttacacagacctc
accccgctcagtaaattcccctctccagagtacgagactttcgctgagtactacaaaacc
aagtacaacctggacctgtctaatgttaaccagcccctactggatgtggaccacacatct
tcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagctcttcctctc
agcagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagtt
ccagagctctgtgccattcaccccatcccagcctctttgtggaggaaagccgtctgcctt
cccagcattctctacagacttcactgccttctgaccgccgaagagctgcggtctcagaca
gccattgacgctggtgtaggggctcaatccctgcctcctgatttcaggtatccaaatttg
gatttcggatggaagaaatccatcgacagcaagtctttcatttcctgccctagtgcatgt
atggaagacgacgatcactgtaaacatggcacaagctccgattcagaccacactgccctg
gagggctgcagcacggaggcctcccagcctccagagggcgctctcccctgtgagaactgc
aacacaccagatgaaaagctagaaacccacatgctccctgtgactgatctgcagacaccg
aacaaagacaagagcgactgcgtttgttcccgaaaccttcctaacggcactcggggcgaa
agcgacgaccttccacatagacatgacatttgccaatgctctcagctgggccctctggag
agtgacctatcaacacaaaccactacctcagttcctgtgcggccctctccagccggcgag
ccacagccccagcccagcgatgaatgtatcccaggcaggaactcagatctctgcgacgga
catgtgaaaaaacctacctcaaactgttgccccaaaccagagctggcaaccagcaccaca
gcaccttcagaagtgtcatcagaggtctctgacgtgacaccaggtccagcctgggattct
cccaaaaccttgggccccaaccccggcctcatcttgcaggccctgaccctctctaacgcc
agtgacggcttcaatctggagaggttggagatgttgggcgactctttcctgaaacacgcc
atcaccacctacctgttctgtacttaccctgatgcccacgagggcaggctgtcttacatg
agaagcaagaaggtcagcaactgtaacctttatcgcctggggaagaaaaagggccttccc
agtcgtatggtggtatccatatttgatcccccagtaaactggcttcccccgggctacgtc
gtgaatcaggacaaaagcagcacagacaagtgggactcagatgagaataaagatttggcc
aacggaaaagccagtgatgatgacgacgacgacgacgacgaggcagaggatgtggaggtc
gagccgtctaaagaagaggtcaatgtggaggatgagctggagtactactatgagcacatc
agattcatcgacaacatgttgattggttccggcgccttcgggaagaagatctccctccag
ccggccgagcccggctacgaatggaaagctcccaaaaaagcccacaactcccagttttcc
ccagacggcggcgctgacgagttcgattacagttcttgggacgccatgtgctacctggac
cctagcaaagctggcgaagaggatgacttcgtggtgggcttctggaacccttccgaagaa
aactgtggcacggatattgggaagcagtccatctcctacgacctccacaccgagcagtgc
atcgccgataagagcatagccgactgtgtagaggccctgctggggtgctacctcaccagc
tgtggggagagggcggcccagctgttcctgtgctccctcggcctgaaggtgctcccggcg
gagaagcagagctcaggggggtcggccgagctgcagtacggctggctgaagatccccccg
cgctgcatgttcgaccacccggatgccgagcgcaccctcaaccacctcatctctggcttc
gagaacttcgagaggaagataaactacacatttaaaaacaaggcatatcttctgcaggct
ttcactcacgcttcgtatcattacaacaccatcacagattgttatcagcggttggagttc
cttggtgatgcaattttagactacctcataacaaagcacctttatgaagatccccggcag
cactccccaggcgtgctgaccgacctgcgctctgcacttgtcaacaacaccatatttgct
tccctggctgtcaagtacgattaccacaagtacttcaaagccgtctcgcccgaactgttc
cacgtgatcgatgattttgtgcaatttcagctggagaagaatgaaatgcaaggaatggat
tcggagcttcgccgatcggaggaagacgaggagaaggaggaagacattgaggtccccaaa
gcaatgggagacatctttgaatcgctagctggtgcaatttacatggatagcgggatgtca
cttgagacagtttggcaagtgtattatccaatgatgaggccgctcatagaaaaattctcc
gctaatgtccctcgatccccagtgcgtgaactcctggagatggaaccggagacggctaag
ttcagccctgcggagagaacctacgatggaaaagtacgggtgacggtggaagtggtgggc
aaaggcaagttcaaaggcgtgggacgcagctaccgtatagccaagtcagcggccgcccgc
cgagccctccgcagtctcaaagccaatcaacctcaggtcctaaacaactga
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integrated database retrieval system
