Puntigrus tetrazona (Sumatra barb): 122361731
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Entry
122361731 CDS
T08985
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122361731 (nrde2)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122361731 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
Suf
TPR_14
TPR_19
TPR_12
TPR_2
Motif
Other DBs
NCBI-GeneID:
122361731
NCBI-ProteinID:
XP_043118595
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All DBs
Position
17:9803837..9816257
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AA seq
1144 aa
AA seq
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MALFPSFAGLSGNNSSTGDKADLEWLSNQSFRTEDALKTHQRATERAQAETEEPAGTREQ
KCKEREDSHGRSKKRKKEKKKKHKRKKNRDNSESSGSESDTIYPSDLLKKENAEREEAQV
RVSETFMWLDDLQTPTDSPFCIDRRADRANWEYRSLYRGDIARYRRKGGSCLGLDVRTQA
LNWNDGGPEKKRVDKKHERYFCPSTRQLLRSDSVLALPVLSEGNSVSSDTYIKLSACNEE
QGSFTQAPTSWVNPLGIYDSGTSLWLEGKGKPEVKGDQQSAEVPGSSKVEEFNRKLRENP
MDTQLWLDFVNFQDELTFGSAADDTDNDGEMKKMSLRAVLEKKLSILDRAVESNPVNVDL
KLKKLCLCKELWEPAALQKEWKKLVFIHPNSAPLWRKYLLFTQSHFSTFSVSKVNGVFGK
CLSTLSAVQDGSMVSHPPLPGTEEDLLDIFLQQCHFLRQAGHAEKAVCLFQALLDFTFFK
PDSVKDLPTRQQVEFFEPFWDSGEPRIGERGARGWKAWMLQQERGGWVIPLEPDEDDEEE
QDDSEIKDKTWPRWKIWLDVETSREANHWLPWRPDKTKGQAEEDCEDPDRQVLFDDLGPS
MIRVDRPALQLQLILSFLQFLGLPGPSGRFSTSSSSNVLLDDLAFLEEGPDPERPLTSHD
FPMAGTCAVGHMTFLNDCRRQAGLCKAGEEFLHNVLQQTLPLVSVQDQAAITLCWLQYEK
LKVLRCLRSGNKRRLKSQGKRSKRLAKRLLKEPDNRGSLALWREYAHLEWLLGNLEEARK
VFDTALAMGVTRGLSDPVLCNLCFLYAQLEVEQALISGTVPTSKAVYILTKLAEGAAYTP
FAGQTNPVATLKARKAYEQALLSFLPEQSTSSYVGAPKKLHRMSSLVGCFGLFQYLTVGI
DAADAVYSQTIQKLISCNLSLEVTDGSLRRPKAFSDWESVAVQHVALLRHHANTSVFPLS
RLRLALTDALSLLPFSASLWQLYLQTENRYHSAGRARRFFHSVAKKTNSIVPYLFAITAE
RRLRQMLNSVQRSHLPGEALSTMPNNGLGNRIRCLFEKATATEHGAHCPLLWRMYLNFTV
CDGSAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTEKELRLRAPMEEVDI
LLED
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccgtccttcgctggactgtcaggcaataacagctctactggggataaa
gcagatctagaatggctgagtaatcagagcttcagaacagaagatgctttgaagactcac
cagcgggccacagagagagcacaggcagagacagaagaaccagcaggcacaagagagcag
aagtgtaaagagagagaagatagccatggcagatcgaagaagagaaagaaagaaaagaag
aaaaaacacaagaggaagaagaacagagataactccgagagcagtggatctgaatcggac
accatttaccccagcgacctgttaaaaaaagagaacgctgaaagagaggaagctcaagtt
cgggtgagcgagacctttatgtggctggatgacctccagacccccactgactcccccttc
tgtattgacagaagagctgaccgtgccaactgggaatacagatccctctataggggagac
atagccaggtataggaggaagggaggctcatgcttggggttagacgtcaggacgcaggct
ttgaattggaacgatggtggaccagagaagaagcgagtggacaagaaacacgaacgctat
ttctgtccttccacccgtcagctgctccggtcagatagtgtgcttgctttgcccgtactc
tctgagggtaattcagtcagctctgatacctacatcaagctctcagcctgcaatgaggag
cagggctctttcacccaggcacccacatcatgggtgaatcctctgggcatctatgacagt
ggaacctccctttggctggagggcaagggtaaaccggaggtcaagggagatcagcagagc
gctgaggttccaggaagcagcaaggtggaggagtttaacaggaagctacgggagaatcct
atggacacccagctgtggctggattttgtgaacttccaggatgaactgacctttggttct
gctgccgatgacacagacaatgatggtgagatgaagaagatgtctcttcgtgccgtgctg
gaaaagaagctgtctattctggacagggcagtggaaagtaatcctgtcaacgtggacctg
aagctgaagaaactctgtctgtgcaaggaactgtgggagcctgccgcactgcagaaggag
tggaagaaactagtgttcatccatccaaacagtgcgccattatggaggaagtatcttctc
ttcacacagagtcatttcagcacgttttcggtgtcgaaggttaacggcgtgtttggaaag
tgtttaagcacgctcagtgcagtccaggacggcagtatggtgtctcaccctccacttcca
ggcactgaggaagacctcttagatatctttctacagcagtgccatttcctgcggcaggcg
ggtcacgctgagaaagctgtgtgtctcttccaagcccttctggatttcactttctttaag
cctgacagcgtgaaagaccttcccactagacaacaggtggaattttttgagccgttttgg
gacagtggggagcctaggattggggaacggggagctcgtggatggaaggcttggatgctt
cagcaggagagagggggatgggtgattccacttgagccagatgaggatgacgaagaagag
caggacgactcggagatcaaagacaaaacctggcctaggtggaagatctggctagatgtg
gagacatcacgagaggcaaaccactggttgccatggagacctgataaaaccaagggtcaa
gcggaagaggactgtgaggaccccgacagacaggttttgtttgatgatctcggcccatct
atgattcgtgtggacagaccagctctccagctgcagctgattctctcattcctgcagttc
ctaggtctgcctggaccctctggaaggttctctacttcctcttcctcaaacgttttatta
gacgatctcgccttccttgaagagggtccagacccagagcgaccgctgacatctcacgac
ttcccaatggctgggacctgtgcagtgggtcacatgacatttctgaatgactgcaggagg
caggcagggctgtgtaaagcaggggaggagtttctccacaacgttctacagcaaactctc
ccacttgtctctgtacaggatcaagctgctattactctctgctggctacagtatgagaaa
ctaaaggtgctgagatgtttacgcagtggaaataaaaggagactgaagtctcaggggaag
cgtagtaaacggctagcaaagcgactgctaaaagagccagataaccggggcagcctggca
ctttggagagagtatgcccatctggagtggcttctgggtaatctggaggaggcacgcaaa
gtatttgacactgccttggccatgggagtgactagaggcctcagtgatcctgttctgtgt
aacctctgctttctctatgcccagttagaggtagagcaggctttaatcagcgggacagtc
cccacttccaaagctgtctacattctcactaaattagcagagggtgctgcctacacacct
ttcgctggccagaccaacccagtggccacgttaaaggccagaaaggcctatgagcaggcc
ctgttgagctttttacctgagcagagcacaagcagctatgtcggagctccaaagaaactc
cacaggatgtccagcctggtaggatgttttgggctttttcagtacctcacagtggggata
gatgcagctgatgctgtgtacagtcagaccattcaaaaactgatttcctgcaacttgagt
ttagaagtgacagatggatctctgaggagacccaaggccttttcagactgggagtctgtt
gctgtccagcatgtagcactgctgcgtcaccacgccaacaccagtgtgtttcctctctct
cggctaagactggcacttacagatgccctctccttactgcccttcagcgcctcattatgg
caactgtaccttcagacagagaaccgctatcacagcgcaggccgtgcccgcaggtttttc
cacagtgtggcaaagaaaactaacagcattgtgccatatctttttgcaattactgcagag
cgacgactgagacagatgctgaactctgttcagaggtctcatcttcctggagaagccctg
tccaccatgccaaataatggtcttggcaaccgtatccgctgtctgtttgaaaaagctaca
gcaacagaacatggggcccactgtcctctgctctggagaatgtatctgaacttcacggta
tgtgatgggagtgcagagaggggcagtggaatcttctacaaggccctgcaggcagtgccc
tgggtaaagggcttgtacatggacgcagtgcagctgttccctgaacgtgtgcaagagttt
ttagatcttatgactgagaaggagttgcgtctgagagcgcccatggaggaggtggacatc
ttgctggaggactag
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