Puntigrus tetrazona (Sumatra barb): 122361746
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Entry
122361746 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04140
Autophagy - animal
ptet04142
Lysosome biogenesis
ptet04148
Efferocytosis
ptet05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
122361746
04140 Autophagy - animal
122361746
04148 Efferocytosis
122361746
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122361746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122361746
Membrane trafficking [BR:
ptet04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122361746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
YolD
UN_NPL4
CYP38_PsbQ-like
Motif
Other DBs
NCBI-GeneID:
122361746
NCBI-ProteinID:
XP_043118621
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Position
17:complement(18921965..18938637)
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWDDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQSSSGE
AKLRMCVAVKRKIQLYYWKDREFHELQGDVAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSVKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSVELQRPRFITSAGSNVVYVASNHFVWRLVPISI
ASQIRQLLQDKQFELALQLAKMKDDADADKRQQIHHIQNLFAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDTDPFTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEXKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFXKEGFKELAIPYLEHIIHLWD
ETRPEFHNVLIQLYLEKVQGLMKVYLNSLPEGVPAVAAGKEEGELGEYRNKLVLFLEVSS
CYEPERLISDFPFDGLLEERALLLGRXGKHEQALFIYVHILKDTRMAEEYCHGHYDPSTN
GNKDVYLSLLRMYLSPPDVHFLGPIKMELCEPQANLQAALNVLQLHHSKLNTTKAINLLP
ANTQIREIQVFLESVLEEKAGRKRFDQVLKSLLQAEFLRCVQEERIFHQQVKCVVTDEKT
CRVCKKKIGNSAFARYPNGVVVHYFCCKDRSVCPAE
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtacgagcccgttcctatcctggagaaactgcccctgcagatcgactgt
ctggcggcctgggatgattggctccttgtggggaccaaacccggtcatctccttctgtac
aggatcaagaaagatgcaggtactaacaggtttgaagttacgttagagaaatccaataag
aacttctcaaagaagattcagcagctttttgtggtgtcacagtacaagattttggttagt
ttgttggaaaataacatccacgttcacgacctgctcacgttccagcagataactgttgtt
tccaaagccaaaggagccacactgtttgcctgtgacctgcagcagtctagctcaggtgaa
gccaagctgcgcatgtgcgtcgcagtcaagaggaaaattcagctgtattactggaaggac
agggagttccacgaactgcagggagatgttgccgctccagacattcccaagtccatggct
tggtgcgagaactccatttgcgtgggtttcaaacgagactactatctgatccggatggac
ggacgcggctcagtcaaagagctgttccccacagggaaacagctggaaccgttggtggcc
ccattggctgatgggaaggtcgcagtgggtcaggatgacctcacggttgttttgaacgaa
gaaggcgtctgcactcagaaatgcgcccttaactggacggacattcccgtcgccatggag
caccagccgccgtacatcatcgcagtgctacctcgctatgtggagatccgcacccttgag
cccagacttctggtgcagagcgtagagctgcagagacctcggttcatcacctccgctgga
tccaatgttgtgtatgtcgctagcaatcactttgtgtggcgtctggtgcccatctctata
gccagccagatacgacagctgctgcaggacaaacagtttgaactggcgcttcagctggcg
aaaatgaaggatgatgcagatgcagacaagagacaacagatccatcacattcagaacctg
tttgccttcaacttgttctgtcagaaacgctttgatgactccatgcaggtgtttgctaag
ctaggcacagaccccactcatgttatcggactgtatccagacctgctcccctctgactac
cgcaaacagctgcactacccgaaccctctgccctctctgtctggagccgagctggagaaa
gcccacctggccctcatagactacctgacacagaaacgcagtcatttagtgaagcagctg
aacgacacggaccccttcaccacctcccctctcatggaagggacccccaccatcaagagc
cgcaaaaagctccttcagatcatcgacaccactctgcttaaatgttacctccacaccaat
gtagccttagtatcgcctcttctgcggctggagaacaaccactgtcacatagaggagagc
gagtatgtgctgaagaaagcccacaagtacagcgaactcatcatcctctatgagnaaaaa
ggccttcatcagaaagctctgcaggttctgctggatcagtccactaaagccaattctcct
ctgaagggccatgagaggactgtacagtatcttcagagactgggtgtggagaacctgggc
atcatatttgagttttcaccgtgggttctgaagatttgtccagaagatggactgaagatc
ttcactgaggaccttacggaggtggagactcttcccagggataaggtgttgaactttntg
aaagaaggcttcaaagagctggccatcccatacctggagcacatcattcacctgtgggac
gagactcggcccgagttccacaatgttctgatccagctctacctggagaaggtgcaaggc
ctcatgaaagtgtatctcaactcactgcctgaaggtgttccagctgtagctgcaggaaag
gaggagggagagctgggagagtacaggaacaagcttgtgttgtttctggaagtgtccagc
tgctacgagcccgagcgactcatcagtgatttcccatttgatggtctgttggaggagagg
gctcttcttctgggtcgtnatgggaaacatgagcaggctctcttcatctacgttcacatt
ctcaaagacacgcgtatggctgaagagtactgtcacggtcattatgatccatcaacaaac
ggcaataaagatgtgtatctgtccctgctgcgcatgtatctgtctcctccggacgtgcac
ttcctcgggcccattaagatggagctatgtgagccacaggcaaacctccaggcggccctg
aatgtccttcagcttcaccacagcaaactgaacaccaccaaagccataaacctgctgcca
gccaacacgcagatccgagagatccaggtctttctggagagcgtgctggaggagaaggct
gggaggaagcgctttgaccaggtcctgaagagcctcctacaggccgagttccttcggtgc
gtgcaggaggagcgtatctttcaccagcaggtgaagtgtgtcgtcacagacgagaaaacc
tgcagggtgtgcaagaagaagattggaaacagtgcctttgccaggtatcctaacggcgtt
gtggttcactacttctgctgtaaagatcgcagcgtgtgtccagcggagtag
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