Puntigrus tetrazona (Sumatra barb): 122362295
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Entry
122362295 CDS
T08985
Symbol
hmbox1a
Name
(RefSeq) homeobox-containing protein 1a isoform X1
KO
K24885
homeobox-containing protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122362295 (hmbox1a)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
122362295 (hmbox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_37
CUT
HTH_31
HTH_24
HTH_26
NOC3p
Motif
Other DBs
NCBI-GeneID:
122362295
NCBI-ProteinID:
XP_043119638
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All DBs
Position
17:complement(4866099..4877836)
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AA seq
447 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRSGMTKQEILHALDTLERLDREHVEKFGHRHAHGGNGA
AGVNHGNGSNATTSSNSCTTSSNNLTASSSTTSTATQTGYRGNGLSPSPSNSYDTSRPPT
APTPVPVVAPMVQNGRDGLAAMPNGKLSPPRFAVSNTSSRAFAYEHPDEEVDIDDKVEEL
MRMDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWY
QLEKTTPGATLAMRPTPMALEDIVEWRQTPPPISSTQGSFRLRRGSRFTWRKECLAVMES
YFNDNQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIE
AAILESHGIDVQSPGGHSNSDEIDGNDYGEPVAADQVLGMDDNTGPNEHQDPIALAVEMA
AVNHSILALARQGGATSDIKTEVLDDE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcccattatacagatgagcctcgttttaccattgagcagatcgacttgctacagcgg
ctacgtcggagcggcatgacaaagcaagagatcttgcacgccctggacaccctcgaacgg
ctggaccgcgagcacgtggaaaaattcggccaccggcacgcccatggcgggaacggggcg
gctggcgtcaatcacggcaacggcagcaatgccaccacctcttccaactcctgcactacc
tcctctaacaacctcacagcctcttcttcgacgacctctacggccacgcagacgggatac
cgtggcaatggcctctctccctcccctagcaacagctatgatacctcccggcccccgacg
gctcccacccctgtgcccgtagtagcacccatggtccaaaatggtcgggatggcctcgcc
gccatgcccaacggaaagctctctccgccccgcttcgctgttagcaacacctcctcgcgg
gcttttgcgtatgagcacccagatgaagaggtggacatcgatgacaaagttgaggagctt
atgagaatggacagtgctataattaaagaagagattaaagcgttcttggggaaccggcga
atatcacaggcagtagttgctcaagttacaggtatcagtcagagccggatttcacattgg
ctgctccagcagggctcagacctcagtgagcagaagaaaagagccttctaccgctggtac
cagctagagaaaactacacctggtgcgacactagcgatgcggcccacacctatggccctg
gaggacattgtggagtggcgtcagacccctcctcctattagcagcacccagggcagcttc
cgtctgcggcgcggcagccgcttcacctggaggaaagagtgtctggcggtgatggagagt
tatttcaatgacaaccagtatcctgatgaagccaaacgagaggaaattgccaacgcctgc
aatgcagttatccagaaaccagggaagaagctttcagatcttgagagggtcacgtctctg
aaagtttacaactggtttgccaacagacggaaggaaattaagagaagagccaacatagaa
gcagcaatcctggagagtcatgggattgatgtccaaagcccaggaggtcattccaacagt
gatgagattgatggaaatgattatggtgagccagtagctgctgaccaagttttaggaatg
gatgacaacaccggtccaaacgaacaccaagaccccatagctttggcagtggagatggcc
gcggtcaatcacagcatcctggcactggcgaggcagggcggagccaccagtgacatcaag
acagaggtgctggacgatgagtga
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